Factsheet for Solyc03g113120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046570	Potato	nucleus	91.03	90.86
CDX86714	Canola	nucleus	13.17	81.18
Bra025693.1-P	Field mustard	nucleus	23.09	42.16
CDY26717	Canola	nucleus	23.09	42.16
KRH63398	Soybean	nucleus	41.79	41.24
KRH56941	Soybean	nucleus	42.94	40.25
Solyc06g070990.2.1	Tomato	nucleus	48.66	39.29
Solyc05g007110.2.1	Tomato	nucleus	29.2	39.03
KRH54509	Soybean	nucleus	45.61	38.86
VIT_17s0000g05810.t01	Wine grape	nucleus	44.85	38.84
Bra031053.1-P	Field mustard	nucleus	34.54	38.51
Zm00001d045375_P001	Maize	nucleus	18.13	38.0
KRH03442	Soybean	nucleus	43.51	38.0
Bra016535.1-P	Field mustard	nucleus	33.59	37.13
Solyc02g067430.2.1	Tomato	nucleus	30.92	36.82
TraesCS3B01G130000.1	Wheat	nucleus	33.97	36.33
CDX81900	Canola	nucleus	35.88	36.22
TraesCS3D01G113300.1	Wheat	nucleus	33.97	36.18
AT1G18860.1	Thale cress	nucleus	36.45	36.17
CDY21693	Canola	nucleus	35.69	36.03
CDX83804	Canola	nucleus	35.11	35.73
CDX96692	Canola	nucleus	35.11	35.59
Os01t0185900-01	Rice	nucleus	33.4	34.52
HORVU3Hr1G020210.2	Barley	nucleus	34.16	34.03
Os06t0146250-00	Rice	nucleus	38.55	33.44
Solyc12g042590.1.1	Tomato	nucleus	13.36	32.41
Zm00001d008794_P001	Maize	nucleus	33.21	32.22
OQU75809	Sorghum	nucleus	37.98	31.84
Solyc02g032950.2.1	Tomato	nucleus	29.96	31.53
EES02331	Sorghum	nucleus	32.44	31.02
Solyc01g104550.2.1	Tomato	nucleus	27.86	30.74
Zm00001d039532_P001	Maize	nucleus	31.87	30.53
TraesCS7D01G092500.2	Wheat	nucleus	33.97	30.12
CDY19255	Canola	nucleus	13.36	29.41
Solyc02g080890.2.1	Tomato	nucleus	30.53	29.09
HORVU7Hr1G021260.1	Barley	nucleus	33.78	29.06
TraesCS7D01G092600.1	Wheat	nucleus	33.21	28.76
Solyc08g067360.2.1	Tomato	nucleus	14.12	28.68
TraesCS7D01G092400.1	Wheat	nucleus	31.87	27.6
TraesCS7D01G092300.1	Wheat	nucleus	31.68	27.44
Solyc08g067340.2.1	Tomato	nucleus	12.98	26.88
Solyc07g051840.2.1	Tomato	nucleus	31.87	26.47
CDX86713	Canola	nucleus	5.73	25.42
Solyc06g068460.2.1	Tomato	nucleus	16.79	24.44
Solyc03g116890.2.1	Tomato	nucleus	15.27	22.86
Bra025692.1-P	Field mustard	nucleus	10.5	22.82
CDY72612	Canola	nucleus	10.5	22.82
TraesCS7A01G096200.1	Wheat	nucleus	10.5	22.73

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4BKG5	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF24	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc03g113120.2
EnsemblPlants:Solyc03g113120.2.1	UniParc:UPI0002767A34	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:63389001..63393181

Molecular Weight (calculated)

58171.3 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.888

Length

524 amino acids

Sequence
(BLAST)

001: METVFRKSTH GGVVKQDIKI KASEEGFVED INDLKVEKER KSIHNEDDNS KSSQQKDLTG DKKDDQLESA KADMEEVMEE NQRLKKHLDK IMKDYRNLQM
101: QFHEVAQRDA EKTNTDVKHD EAELVSLSLG RTSSDTKKEL SKLILSKKEN DEKEEDNLTL ALDCKFQSST KSSPSNLSPE NSLGEVKDDE KGTDQTWPPH
201: KVLKTIRNEE DDVTQQNPTK RAKVSVRVRC DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVAPNCPVR KQVQRCIQDM SILITTYEGT HNHPLPHSAT
301: SMAFTTSAAA SMLLSGSSSS GSGPTSSTAS ATTSALNYCF SDNSKPNPFY NLPHSSISSS SHSQYPTITL DLTSNSSTSS FPGQNYRTIA NSNNYPPRYN
401: NNNSSTNILN FSSFESNHLL PMSWSNRNNQ DTHSQSYLQN NIKSAASTQT LLPQDTIAAA TKAITSDPKF QSALAVALTS IIGSRSGNHH IDEKSGQNMK
501: VTEPFPVLCS FPSTSPGDHK DYTL

Best Arabidopsis Sequence Match ( AT5G15130.1 )
(BLAST)

001: MEVLLKLPSS ESPLKDKFGS VQIHEANKGD GDHQELESAK AEMSEVKEEN EKLKGMLERI ESDYKSLKLR FFDIIQQEPS NTATKNQNMV DHPKPTTTDL
101: SSFDQERELV SLSLGRRSSS PSDSVPKKEE KTDAISAEVN ADEELTKAGL TLGINNGNGG EPKEGLSMEN RANSGSEEAW APGKVTGKRS SPAPASGGDA
201: DGEAGQQNHV KRARVCVRAR CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCADD MSILITTYEG THSHSLPLSA TTMASTTSAA
301: ASMLLSGSSS SPAAEMIGNN LYDNSRFNNN NKSFYSPTLH SPLHPTVTLD LTAPQHSSSS SSSLLSLNFN KFSNSFQRFP STSLNFSSTS STSSNPSTLN
401: LPAIWGNGYS SYTPYPYNNV QFGTSNLGKT VQNSQSLTET LTKALTSDPS FHSVIAAAIS TMVGSNGEQQ IVGPRHSISN NIQQTNTTNN NKGCGGYFSS
501: LLMSNIMASN QTGASLDQPS SQLPPFSMFK NSSSSSSTTN FVNKEEKS

Arabidopsis Description

WRKY72Probable WRKY transcription factor 72 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.