Factsheet for Solyc02g080890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042400	Potato	nucleus	95.45	94.94
Solyc02g032950.2.1	Tomato	nucleus	63.45	70.08
VIT_10s0116g01200.t01	Wine grape	nucleus	63.82	65.61
CDX97845	Canola	nucleus	27.27	62.24
GSMUA_Achr3P03090_001	Banana	nucleus	41.64	59.95
KRH11472	Soybean	nucleus	58.91	58.17
KRH36485	Soybean	nucleus	56.36	57.3
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	36.36	57.14
KRH02033	Soybean	nucleus	50.55	56.85
KRH51128	Soybean	nucleus, plastid	52.73	56.09
GSMUA_Achr5P16750_001	Banana	nucleus	48.91	55.35
CDX82900	Canola	nucleus	51.27	54.13
AT4G22070.1	Thale cress	nucleus	52.0	53.16
Bra013584.1-P	Field mustard	nucleus	51.45	52.6
CDY21301	Canola	nucleus	48.18	52.27
CDX90863	Canola	nucleus	48.0	52.07
AT4G04450.1	Thale cress	nucleus	49.82	51.89
Bra000793.1-P	Field mustard	nucleus	48.73	51.64
CDY12937	Canola	nucleus	51.82	51.63
GSMUA_Achr10P...	Banana	nucleus	46.55	51.61
AT1G62300.1	Thale cress	nucleus	51.82	51.54
CDY19535	Canola	nucleus	51.64	51.45
Bra027057.1-P	Field mustard	nucleus	51.64	51.45
CDX94553	Canola	nucleus	45.64	51.12
GSMUA_Achr10P...	Banana	nucleus	46.91	50.59
CDY16669	Canola	nucleus	45.09	50.41
GSMUA_Achr2P15200_001	Banana	nucleus	48.73	50.38
GSMUA_Achr6P05880_001	Banana	nucleus	43.45	50.21
Bra029491.1-P	Field mustard	nucleus	44.18	49.39
GSMUA_Achr6P13630_001	Banana	nucleus	46.36	48.66
Bra034482.1-P	Field mustard	nucleus	43.45	47.14
CDY08634	Canola	nucleus	42.91	46.92
CDY24892	Canola	nucleus	44.0	46.18
Solyc07g051840.2.1	Tomato	nucleus	52.91	46.12
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	39.27	44.26
TraesCS3A01G167200.1	Wheat	nucleus	42.73	40.87
TraesCS3B01G199000.2	Wheat	nucleus	43.09	40.86
Zm00001d039245_P001	Maize	nucleus	39.45	40.11
EES02155	Sorghum	nucleus	40.18	38.77
HORVU3Hr1G033740.2	Barley	nucleus, plastid	43.45	38.0
TraesCS3D01G173300.2	Wheat	plastid	42.91	37.11
Solyc12g042590.1.1	Tomato	nucleus	13.27	33.8
Solyc05g007110.2.1	Tomato	nucleus	22.55	31.63
Solyc08g067360.2.1	Tomato	nucleus	14.73	31.4
Solyc03g113120.2.1	Tomato	nucleus	29.09	30.53
Solyc08g067340.2.1	Tomato	nucleus	14.0	30.43
Solyc06g068460.2.1	Tomato	nucleus	19.45	29.72
Solyc02g067430.2.1	Tomato	nucleus	23.45	29.32
Solyc01g104550.2.1	Tomato	nucleus	24.55	28.42
Solyc03g116890.2.1	Tomato	nucleus	17.64	27.71
Os01t0246700-01	Rice	nucleus	19.09	25.42
Solyc06g070990.2.1	Tomato	nucleus	29.45	24.96

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4B9V9	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF31	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc02g080890.2
EnsemblPlants:Solyc02g080890.2.1	UniParc:UPI0002769213	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:44991244..44993799

Molecular Weight (calculated)

59667.0 Da

IEP (calculated)

7.648

GRAVY (calculated)

-0.594

Length

550 amino acids

Sequence
(BLAST)

001: MDKGWGLTLE TSSSNSDRAG FFKNKPVFGF NLSPKFNAAE MFSSSDEKRS IVNEVDFFAD KKPIVKKENS QTDNSIRTDD QCVVNTGLQL VIANAGSDQS
101: TVDDGVSSEV LEEKRAKIQQ LAQLQVELER MNSENQRLKG MLTQVSNSYS ALQMHLVTLM QQQLNSRTEN THPHEVVGAN SDEEKKKANN GTIVPRQFME
201: LGPSGSKVDP MDEPSHSRSS SEERTLSGSP RNNMELVSRD KAINREESPE SESWAPNKAP KLMTSSSKPV EQSTEATMRK ARVSVRARSE APMISDGCQW
301: RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRCAEDRS ILITTYEGTH NHPLPPAAMA MASTTSAAAN MLLSGSMPSA DGLMNTNFLA RAMLPCSSNM
401: ATISASAPFP TVTLDLTAQN PNAALPNYHQ RINQANPQFQ FPLPAGLNHP NFAASMSAPQ MPHVLGQPLY NQSKFSGLQI SQENIHHHHP SISHDTLSAA
501: TAAITADPNF TAALAAAISS IIGGSHPNNG NSPMSGPSSN NNNTSSFPGN

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.