Factsheet for Bra029491.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16669	Canola	nucleus	97.56	97.56
CDX94553	Canola	nucleus	95.33	95.52
Bra000793.1-P	Field mustard	nucleus	83.13	78.81
AT4G04450.1	Thale cress	nucleus	81.71	76.14
Bra013584.1-P	Field mustard	nucleus	70.12	64.13
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	34.15	48.0
GSMUA_Achr5P16750_001	Banana	nucleus	46.14	46.71
KRH02033	Soybean	nucleus	46.34	46.63
VIT_10s0116g01200.t01	Wine grape	nucleus	50.0	45.98
KRH36485	Soybean	nucleus	50.0	45.47
Solyc02g080890.2.1	Tomato	nucleus	49.39	44.18
KRH11472	Soybean	nucleus	50.0	44.17
PGSC0003DMT400056725	Potato	nucleus	44.31	43.95
PGSC0003DMT400042400	Potato	nucleus	49.39	43.94
Solyc02g032950.2.1	Tomato	nucleus	44.31	43.78
GSMUA_Achr3P03090_001	Banana	nucleus	33.74	43.46
KRH51128	Soybean	nucleus, plastid	45.53	43.33
GSMUA_Achr10P...	Banana	nucleus	43.29	42.94
Bra027057.1-P	Field mustard	nucleus	48.17	42.93
GSMUA_Achr10P...	Banana	nucleus	43.09	41.57
GSMUA_Achr6P13630_001	Banana	nucleus	43.9	41.22
GSMUA_Achr2P15200_001	Banana	nucleus	43.29	40.04
Bra034482.1-P	Field mustard	nucleus	40.85	39.65
GSMUA_Achr6P05880_001	Banana	nucleus	37.4	38.66
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	36.59	36.89
Bra036315.1-P	Field mustard	nucleus	33.13	33.27
Bra019123.1-P	Field mustard	nucleus	13.01	32.99
Bra008435.1-P	Field mustard	nucleus	18.5	31.38
Bra035148.1-P	Field mustard	nucleus	18.9	31.0
Zm00001d039245_P001	Maize	nucleus	33.94	30.87
TraesCS3B01G199000.2	Wheat	nucleus	36.18	30.69
TraesCS3A01G167200.1	Wheat	nucleus	35.77	30.61
EES02155	Sorghum	nucleus	34.76	30.0
Bra003588.1-P	Field mustard	nucleus	17.68	29.29
Bra004285.1-P	Field mustard	nucleus	19.51	29.27
Bra007884.1-P	Field mustard	nucleus	22.36	28.72
Bra025693.1-P	Field mustard	nucleus	16.67	28.57
Bra031053.1-P	Field mustard	nucleus	27.24	28.51
Bra010220.1-P	Field mustard	nucleus	17.68	28.25
Bra016535.1-P	Field mustard	nucleus	27.03	28.06
TraesCS3D01G173300.2	Wheat	plastid	35.98	27.83
HORVU3Hr1G033740.2	Barley	nucleus, plastid	35.57	27.82
Bra011299.1-P	Field mustard	nucleus	17.89	27.76
Bra023983.1-P	Field mustard	nucleus	17.68	25.22
Bra023505.1-P	Field mustard	nucleus	26.22	25.0
Bra006283.1-P	Field mustard	nucleus	26.63	24.86
Bra008719.1-P	Field mustard	nucleus	27.24	24.32
Bra040505.1-P	Field mustard	nucleus	24.59	22.62
Bra025692.1-P	Field mustard	nucleus	9.15	18.67
Os01t0246700-01	Rice	nucleus	15.24	18.16
Bra016263.1-P	Field mustard	nucleus	21.54	14.17

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra029491	EnsemblPlants:Bra029491.1	EnsemblPlants:Bra029491.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:M4EL24	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF31
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002542708	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

AT4G04450 (E=1e-156) WRKY42, AtWRKY42 | WRKY42; transcription factor

Coordinates

chrA09:-:17614028..17616892

Molecular Weight (calculated)

54286.0 Da

IEP (calculated)

6.456

GRAVY (calculated)

-0.838

Length

492 amino acids

Sequence
(BLAST)

001: MFRFPVSLGG QGDNLKHTQP SDEQHHRPIM DEVDFFRSEK RDDQNVITEE THRLHVKREN SRVDDDDYRS MGINTGLNLL TANTGSDESL VDDGLSVDME
101: EKRTKIENTQ LREELKKSNE ENQRLKEMLS QTTNNFNSLQ MQLVAVMRQE EDHHHLARIE SKDKDTNRHE APEMVPRQFI DLGLPSAEVS SDERIKVRSR
201: SPPSLLEDSS SRQRAKRVLE IEESPENESN GWGNPSKVSK HNASSSNGNG NAIDQSAADA TMRKARVSVR ARSEAPMLSD GCQWRKYGQK MAKGNPCPRA
301: YYRCTMAVGC PVRKQVQRCA EDRSILITTY EGNHNHPLPP AAMYIASTTT AGASMLLSGS AMSNQDASAP FPTITLDLTE SASNVNGPTN NNPLMQFSQR
401: SGLAELNQSG LPQMMGQALY YNQQQSKFSG LHIPSQSLNA GESVNAAMAT NPNFAAALAA AITSIINGSS NRQNGSSNSS NNNVTTSSGD RQ

Best Arabidopsis Sequence Match ( AT4G04450.1 )
(BLAST)

001: MFRFPVSLGG GPRENLKPSD EQHQRAVVNE VDFFRSAEKR DRVSREEQNI IADETHRVHV KRENSRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGL
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ

Arabidopsis Description

WRKY42WRKY transcription factor 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.