Factsheet for Bra010220.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000891.1-P
Bra003118.1-P
Bra003588.1-P
Bra008435.1-P
Bra008559.1-P
Bra010220.1-P
Bra011299.1-P
Bra019123.1-P
Bra020407.1-P
Bra023983.1-P
Bra029112.1-P
Bra033010.1-P
Bra035148.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25000.1	Bra003588.1-P	AT1G80840.1	16603654
AT2G25000.1	Bra008435.1-P	AT1G80840.1	16603654
AT2G25000.1	Bra035148.1-P	AT1G80840.1	16603654
AT2G25000.1	Bra010220.1-P	AT2G25000.1	16603654
AT2G25000.1	Bra010220.1-P	AT2G25000.1	21798944
AT2G25000.1	Bra033010.1-P	AT3G27420.1	21798944
AT2G25000.1	Bra000891.1-P	AT4G02150.1	21798944
AT2G25000.1	Bra008559.1-P	AT4G02150.1	21798944
AT2G25000.1	Bra011299.1-P	AT4G31800.1	16603654
AT2G25000.1	Bra019123.1-P	AT4G31800.1	16603654
AT2G25000.1	Bra023983.1-P	AT4G31800.1	16603654
AT2G25000.1	Bra011299.1-P	AT4G31800.1	21798944
AT2G25000.1	Bra019123.1-P	AT4G31800.1	21798944
AT2G25000.1	Bra023983.1-P	AT4G31800.1	21798944
AT2G25000.1	Bra003118.1-P	AT5G52650.1	21798944
AT2G25000.1	Bra029112.1-P	AT5G52650.1	21798944
AT2G25000.1	Bra020407.1-P	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39879	Canola	nucleus	96.1	96.42
Bra011299.1-P	Field mustard	nucleus	81.82	79.5
Bra019123.1-P	Field mustard	nucleus	49.35	78.35
Bra023983.1-P	Field mustard	nucleus	75.65	67.54
AT2G25000.1	Thale cress	nucleus	57.14	64.94
GSMUA_Achr7P19340_001	Banana	nucleus	31.82	51.04
GSMUA_Achr2P05100_001	Banana	nucleus	30.52	49.47
PGSC0003DMT400019058	Potato	nucleus	38.96	45.98
Solyc08g067360.2.1	Tomato	nucleus	37.99	45.35
GSMUA_Achr5P16460_001	Banana	nucleus	34.42	45.11
KRH61669	Soybean	nucleus	32.14	45.0
GSMUA_Achr10P...	Banana	nucleus	33.44	44.4
PGSC0003DMT400019061	Potato	nucleus	36.36	44.27
Solyc08g067340.2.1	Tomato	nucleus	36.04	43.87
VIT_04s0008g05760.t01	Wine grape	nucleus	45.13	43.85
KRH15674	Soybean	nucleus	39.94	43.62
GSMUA_Achr11P...	Banana	nucleus	34.42	43.27
Bra008435.1-P	Field mustard	nucleus	40.58	43.1
HORVU5Hr1G065380.2	Barley	nucleus	24.03	42.53
Bra003588.1-P	Field mustard	nucleus	40.91	42.42
GSMUA_Achr7P05200_001	Banana	nucleus	37.99	41.79
Bra035148.1-P	Field mustard	nucleus	40.58	41.67
GSMUA_Achr3P13440_001	Banana	nucleus	36.69	41.09
GSMUA_Achr10P...	Banana	nucleus	37.66	40.28
GSMUA_Achr7P16090_001	Banana	endoplasmic reticulum, nucleus, plastid	28.9	39.91
KRH05350	Soybean	nucleus	39.29	38.78
GSMUA_Achr4P01930_001	Banana	extracellular, golgi	34.74	37.02
Os02t0181300-01	Rice	nucleus	39.94	35.34
KRH52329	Soybean	nucleus	35.06	34.95
TraesCS6A01G146900.1	Wheat	nucleus	39.61	34.86
TraesCS6D01G136200.1	Wheat	nucleus	39.29	34.77
GSMUA_Achr1P10080_001	Banana	nucleus	37.66	34.63
TraesCS7D01G497400.1	Wheat	nucleus	36.69	34.56
Os06t0649000-01	Rice	nucleus	37.66	34.42
TraesCS7B01G418500.2	Wheat	nucleus	36.69	34.35
TraesCS7A01G508700.1	Wheat	nucleus	36.04	34.26
TraesCS7B01G418400.1	Wheat	nucleus	36.04	34.05
Zm00001d053746_P001	Maize	nucleus	35.39	33.96
TraesCS7B01G419400.1	Wheat	nucleus	35.39	33.85
TraesCS7D01G497800.1	Wheat	nucleus	35.71	33.74
HORVU6Hr1G028790.1	Barley	nucleus	38.64	33.71
TraesCS7A01G508800.1	Wheat	nucleus	35.71	33.64
EER90124	Sorghum	nucleus	37.34	33.63
HORVU7Hr1G113830.1	Barley	nucleus	34.74	33.54
TraesCS7D01G497700.1	Wheat	nucleus	35.71	33.54
Zm00001d015515_P001	Maize	nucleus	37.66	33.43
TraesCS5B01G224000.1	Wheat	nucleus	35.71	33.23
TraesCS5D01G232700.1	Wheat	nucleus	29.22	33.21
EER88729	Sorghum	nucleus	37.34	33.05
TraesCS6B01G175100.2	Wheat	nucleus	37.99	32.96
TraesCS5D01G232800.1	Wheat	nucleus	35.39	32.93
TraesCS5A01G225600.1	Wheat	nucleus	35.06	32.63
TraesCS7B01G418600.1	Wheat	nucleus	30.52	32.53
Zm00001d046805_P001	Maize	nucleus	37.01	32.48
TraesCS5A01G225500.1	Wheat	nucleus	28.57	32.47
Zm00001d020495_P001	Maize	nucleus	27.92	32.33
EES04642	Sorghum	nucleus	37.99	32.14
Zm00001d020492_P001	Maize	nucleus	31.49	32.12
Zm00001d036726_P001	Maize	nucleus	35.71	31.98
TraesCS7A01G509000.1	Wheat	nucleus	35.71	31.61
KXG35639	Sorghum	nucleus	30.19	31.53
TraesCS5B01G224100.1	Wheat	nucleus	33.77	31.52
Os09t0417600-02	Rice	nucleus	33.44	31.5
EER98905	Sorghum	nucleus, plastid	32.79	30.89
TraesCS7D01G497300.1	Wheat	plastid	36.04	29.84
Os09t0417800-01	Rice	nucleus	29.55	28.62
TraesCS5D01G232900.1	Wheat	nucleus	34.09	28.3
HORVU7Hr1G113850.4	Barley	nucleus, plastid	36.36	27.59
HORVU5Hr1G065420.15	Barley	nucleus	34.74	27.37
Zm00001d005749_P001	Maize	nucleus	30.84	27.07
Bra025693.1-P	Field mustard	nucleus	19.16	20.56
Bra004285.1-P	Field mustard	nucleus	18.83	17.68
Bra029491.1-P	Field mustard	nucleus	28.25	17.68
Bra036315.1-P	Field mustard	nucleus	27.27	17.14
Bra027057.1-P	Field mustard	nucleus	30.52	17.03
Bra007884.1-P	Field mustard	nucleus	21.1	16.97
Bra000793.1-P	Field mustard	nucleus	27.27	16.18
Bra013584.1-P	Field mustard	nucleus	28.25	16.17
Bra016535.1-P	Field mustard	nucleus	24.68	16.03
Bra031053.1-P	Field mustard	nucleus	24.35	15.96
Bra006283.1-P	Field mustard	nucleus	26.95	15.75
Bra034482.1-P	Field mustard	nucleus	25.65	15.58
Bra023505.1-P	Field mustard	nucleus	25.97	15.5
Bra008719.1-P	Field mustard	nucleus	26.62	14.88
Bra040505.1-P	Field mustard	nucleus	25.0	14.39
Bra016263.1-P	Field mustard	nucleus	19.48	8.02
Bra025692.1-P	Field mustard	nucleus	5.19	6.64

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra010220	EnsemblPlants:Bra010220.1	EnsemblPlants:Bra010220.1-P	ncoils:Coil
GO:GO:0002237	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009719	GO:GO:0009751	GO:GO:0009987	GO:GO:0031347	GO:GO:0042742
GO:GO:0043565	GO:GO:0050832	InterPro:IPR003657	InterPro:IPR036576	UniProt:M4D171	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF32	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002546B3F
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	:	:	:	:

Description

AT4G31800 (E=1e-131) WRKY18 | WRKY18; transcription factor

Coordinates

chrA08:-:13245099..13246942

Molecular Weight (calculated)

34712.6 Da

IEP (calculated)

8.216

GRAVY (calculated)

-0.854

Length

308 amino acids

Sequence
(BLAST)

001: MDCSSSLDIS LNLNTNAFDR SFPAKLPKEE EVKVSTSAGV ERKWLVKDKS ASELREELNR VYSENKKIKE MLETVCEKYY ALHHHLEKLQ SRKSPGIDHI
101: EQPTKKRKQD PEDFLGFPNG KTENSSSNQD HHHQQYEQKN QLLSCKRPVT DSFNKVKVST VYFPADFSDT SLTVKDGYQW RKYGQKVTRD NPSPRAYFRC
201: SFAPSCPVKK KVQRSAEDSS ILVATYEGTH NHLGPNASEG DATSQGGSST VTLDMVHVGQ RLDLEKNERG TMQEVLVQQM ASSLTNDSNF TAALAAAITG
301: RLMEQSRT

Best Arabidopsis Sequence Match ( AT4G31800.1 )
(BLAST)

001: MDGSSFLDIS LDLNTNPFSA KLPKKEVSVL ASTHLKRKWL EQDESASELR EELNRVNSEN KKLTEMLARV CESYNELHNH LEKLQSRQSP EIEQTDIPIK
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT

Arabidopsis Description

WRKY18WRKY like transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0WTZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.