Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G146900.1 | Wheat | nucleus | 96.84 | 96.29 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 95.69 | 93.8 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 93.68 | 92.35 |
| Os02t0181300-01 | Rice | nucleus | 70.98 | 70.98 |
| Zm00001d053746_P001 | Maize | nucleus | 65.23 | 70.72 |
| Zm00001d015515_P001 | Maize | nucleus | 69.83 | 70.03 |
| EES04642 | Sorghum | nucleus | 72.13 | 68.96 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 54.89 | 58.41 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 52.59 | 56.13 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 51.72 | 54.88 |
| TraesCS7D01G497300.1 | Wheat | plastid | 51.15 | 47.85 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 38.22 | 47.5 |
| Bra019123.1-P | Field mustard | nucleus | 26.15 | 46.91 |
| PGSC0003DMT400073710 | Potato | nucleus | 28.74 | 46.08 |
| Solyc12g042590.1.1 | Tomato | nucleus | 27.87 | 44.91 |
| Solyc08g067340.2.1 | Tomato | nucleus | 31.61 | 43.48 |
| PGSC0003DMT400019061 | Potato | nucleus | 31.32 | 43.08 |
| KRH61669 | Soybean | nucleus | 27.01 | 42.73 |
| Solyc08g067360.2.1 | Tomato | nucleus | 31.61 | 42.64 |
| PGSC0003DMT400019058 | Potato | nucleus | 31.9 | 42.53 |
| CDX72327 | Canola | nucleus | 34.48 | 42.11 |
| KRH15674 | Soybean | nucleus | 33.91 | 41.84 |
| CDX75196 | Canola | nucleus | 33.91 | 41.7 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 36.78 | 41.16 |
| AT2G25000.1 | Thale cress | nucleus | 31.61 | 40.59 |
| KRH47344 | Soybean | nucleus | 35.63 | 39.87 |
| KRH23643 | Soybean | nucleus | 35.34 | 39.81 |
| KRH44560 | Soybean | nucleus | 35.34 | 39.3 |
| Bra010220.1-P | Field mustard | nucleus | 34.77 | 39.29 |
| CDY39879 | Canola | nucleus | 34.48 | 39.09 |
| Bra008435.1-P | Field mustard | nucleus | 32.47 | 38.97 |
| CDY22299 | Canola | nucleus | 32.47 | 38.97 |
| CDX68787 | Canola | nucleus | 35.63 | 38.87 |
| Bra011299.1-P | Field mustard | nucleus | 35.34 | 38.8 |
| CDY67287 | Canola | nucleus | 32.18 | 38.62 |
| AT1G80840.1 | Thale cress | nucleus | 33.33 | 38.41 |
| CDX67971 | Canola | nucleus | 32.76 | 38.38 |
| Bra003588.1-P | Field mustard | nucleus | 32.76 | 38.38 |
| Bra035148.1-P | Field mustard | nucleus | 33.05 | 38.33 |
| CDX87347 | Canola | nucleus | 33.05 | 38.33 |
| CDX88573 | Canola | nucleus | 33.05 | 38.21 |
| KRH05350 | Soybean | nucleus | 34.2 | 38.14 |
| AT4G31800.1 | Thale cress | nucleus | 33.91 | 38.06 |
| CDX79347 | Canola | nucleus | 32.18 | 37.58 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 34.2 | 37.54 |
| TraesCS5D01G232700.1 | Wheat | nucleus | 29.02 | 37.27 |
| KRH09652 | Soybean | nucleus | 34.48 | 36.36 |
| Solyc06g068460.2.1 | Tomato | nucleus | 36.21 | 35.0 |
| PGSC0003DMT400073396 | Potato | nucleus | 35.92 | 34.72 |
| Solyc03g116890.2.1 | Tomato | nucleus | 34.48 | 34.29 |
| Bra023983.1-P | Field mustard | nucleus | 33.62 | 33.91 |
| CDY70096 | Canola | nucleus | 33.62 | 33.91 |
| KRH52329 | Soybean | nucleus | 29.89 | 33.66 |
| PGSC0003DMT400051047 | Potato | nucleus | 33.91 | 33.24 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 30.46 | 32.02 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 31.61 | 29.65 |
| TraesCS3D01G113300.1 | Wheat | nucleus | 22.99 | 16.26 |
| TraesCS1D01G412500.1 | Wheat | nucleus | 25.29 | 14.89 |
| TraesCS7D01G092600.1 | Wheat | nucleus | 25.29 | 14.55 |
| TraesCS7D01G092500.2 | Wheat | nucleus | 23.85 | 14.04 |
| TraesCS3D01G173300.2 | Wheat | plastid | 25.29 | 13.84 |
| TraesCS6D01G306300.1 | Wheat | nucleus | 21.84 | 13.6 |
| TraesCS7D01G092400.1 | Wheat | nucleus | 22.13 | 12.73 |
| TraesCS7D01G092300.1 | Wheat | nucleus | 21.55 | 12.4 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0002237 | GO:GO:0002238 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 |
| GO:GO:0009414 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009611 | GO:GO:0009617 | GO:GO:0009620 |
| GO:GO:0009623 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009737 |
| GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009938 | GO:GO:0009987 | GO:GO:0010200 |
| GO:GO:0031347 | GO:GO:0043565 | GO:GO:0045892 | GO:GO:1990841 | InterPro:IPR003657 | InterPro:IPR036576 |
| PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF9 | SMART:SM00774 | SUPFAM:SSF118290 |
| EnsemblPlantsGene:TraesCS6D01G136200 | EnsemblPlants:TraesCS6D01G136200.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:-:104453755..104455299
Molecular Weight (calculated)
37753.3 Da
IEP (calculated)
8.160
GRAVY (calculated)
-0.745
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPWVSSQPS LSLDLHVGLP PMGHPHHHQA APMVALAKPK VLVEENFMQL KKDPEVAVLE SELQRVSEEN RRLGEMLREV ASKYEALQGQ FTDMVTAGAH
101: AGGNNNNYNN QPSSASEGGS VSPSRKRKSE ESLGTPPPSH QQHYAAGLAY AAAPDQAECT SGEPCKRIRE ECKPVVSKRY VHADPADLSL VVKDGYQWRK
201: YGQKVTKDNP CPRAYFRCSF APGCPVKKKV QRSAEDKTIL VATYEGEHNH SQPPPSQPQQ QNDGSGAGKN SGKPPQAPTT PHHPQQHKQE AAAAAVSGES
301: AAAASELIRR NLAEQMAMTL TRDPSFKAAL VSALSGRILE LSPTRDIN
101: AGGNNNNYNN QPSSASEGGS VSPSRKRKSE ESLGTPPPSH QQHYAAGLAY AAAPDQAECT SGEPCKRIRE ECKPVVSKRY VHADPADLSL VVKDGYQWRK
201: YGQKVTKDNP CPRAYFRCSF APGCPVKKKV QRSAEDKTIL VATYEGEHNH SQPPPSQPQQ QNDGSGAGKN SGKPPQAPTT PHHPQQHKQE AAAAAVSGES
301: AAAASELIRR NLAEQMAMTL TRDPSFKAAL VSALSGRILE LSPTRDIN
001: MDYDPNTNPF DLHFSGKLPK REVSASASKV VEKKWLVKDE KRNMLQDEIN RVNSENKKLT EMLARVCEKY YALNNLMEEL QSRKSPESVN FQNKQLTGKR
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
Arabidopsis Description
WRKY60Probable WRKY transcription factor 60 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.