Factsheet for TraesCS2D01G353600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
nucleus: 28628250

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G182300.1
TraesCS4B01G136100.2
TraesCS4D01G130900.1
TraesCS5A01G153500.1
TraesCS5B01G152300.1
TraesCS5D01G158800.1
TraesCS6A01G110100.2
TraesCS6A01G155300.1
TraesCS6A01G186600.1
TraesCS6A01G186800.1
TraesCS6B01G138400.1
TraesCS6B01G183400.1
TraesCS6B01G217700.1
TraesCS6B01G217800.1
TraesCS6D01G098500.1
TraesCS6D01G145200.1
TraesCS6D01G173700.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	TraesCS6A01G110100.2	AT1G27360.1	21798944
AT2G24050.1	TraesCS6A01G155300.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6B01G138400.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6B01G183400.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6D01G098500.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6D01G145200.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS4A01G182300.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS4B01G136100.2	AT3G08530.1	21798944
AT2G24050.1	TraesCS4D01G130900.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS5A01G153500.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS5B01G152300.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS5D01G158800.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS1A01G149200.1	AT5G35620.1	21798944
AT2G24050.1	TraesCS1B01G167100.1	AT5G35620.1	21798944
AT2G24050.1	TraesCS1D01G146500.1	AT5G35620.1	21798944
AT5G57870.1	TraesCS6A01G186600.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6A01G186800.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6B01G217700.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6B01G217800.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6D01G173700.3	AT1G72730.1	21798944
AT5G57870.1	TraesCS4A01G182300.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS4B01G136100.2	AT3G08530.1	21798944
AT5G57870.1	TraesCS4D01G130900.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS5A01G153500.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS5B01G152300.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS5D01G158800.1	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G373600.1	Wheat	cytosol	98.98	98.86
TraesCS2A01G354900.1	Wheat	cytosol	98.6	98.35
HORVU2Hr1G086240.1	Barley	cytosol	92.39	96.68
EES12452	Sorghum	cytosol	78.68	78.38
Zm00001d003147_P001	Maize	plastid	77.28	77.48
Zm00001d025777_P007	Maize	plastid	76.52	76.82
Os04t0499300-01	Rice	plastid	75.76	74.07
GSMUA_Achr4P06000_001	Banana	cytosol	3.68	70.73
VIT_11s0037g00490.t01	Wine grape	plastid	60.15	59.7
CDY69274	Canola	cytosol, mitochondrion	24.75	59.63
Solyc07g005810.2.1	Tomato	plastid	57.36	58.47
GSMUA_Achr9P22750_001	Banana	plastid	55.08	58.33
Solyc12g009960.1.1	Tomato	nucleus	57.11	58.21
PGSC0003DMT400020464	Potato	cytosol	56.85	57.96
PGSC0003DMT400029102	Potato	cytosol, plastid	56.98	57.56
KRH55033	Soybean	endoplasmic reticulum	56.47	57.42
KRH72326	Soybean	endoplasmic reticulum	56.85	57.14
GSMUA_AchrUn_...	Banana	cytosol	54.06	57.1
KRH03030	Soybean	endoplasmic reticulum	56.98	56.91
KRH63081	Soybean	endoplasmic reticulum	55.71	56.72
CDY39236	Canola	cytosol	53.05	56.56
GSMUA_Achr4P05990_001	Banana	cytosol	10.53	56.46
Bra024051.1-P	Field mustard	cytosol	53.3	56.15
CDY28211	Canola	mitochondrion	33.38	55.72
AT5G57870.1	Thale cress	plastid	54.82	55.38
CDY28203	Canola	cytosol	35.79	55.19
CDX72262	Canola	cytosol	51.9	54.83
CDY32742	Canola	plastid	52.79	54.03
Bra011211.1-P	Field mustard	plastid	51.27	53.94
Bra020407.1-P	Field mustard	plastid	52.66	53.9
CDX68687	Canola	plastid	51.14	53.88
AT2G24050.1	Thale cress	plastid	50.63	53.41
Bra011218.1-P	Field mustard	plastid	36.93	53.2
CDY02774	Canola	plastid	51.9	52.98
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	58.76	52.43
GSMUA_Achr3P28040_001	Banana	cytosol	28.17	49.22
GSMUA_Achr4P05970_001	Banana	cytosol	8.76	45.7
AT4G30680.1	Thale cress	mitochondrion, plastid	14.21	42.59
Solyc07g005780.1.1	Tomato	cytosol	24.11	42.22
AT1G62410.1	Thale cress	cytosol	11.42	40.36
GSMUA_Achr4P12750_001	Banana	cytosol	59.26	40.26
TraesCS2D01G388100.1	Wheat	nucleus	22.59	9.99
TraesCS2D01G215300.1	Wheat	nucleus	23.35	9.82

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32
SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	EnsemblPlantsGene:TraesCS2D01G353600	EnsemblPlants:TraesCS2D01G353600.1	SEG:seg

Description

No Description!

Coordinates

chr2D:-:451971527..451977047

Molecular Weight (calculated)

86300.1 Da

IEP (calculated)

8.143

GRAVY (calculated)

-0.486

Length

788 amino acids

Sequence
(BLAST)

001: MTTDQPVISL RPGGGGGGPR GGRLFAPAFA VAASGSGDFL RPHGGGASGV SRIGDLHSES RERVRYSRDQ LLDLRKITDV TEQILRLQQE IEAELNGDDQ
101: SWVRNDSNVQ LQTQAQPQVQ AQNRFTETDN RDWRARTEKP PAPAVQEEKS WDNIREVKEQ YNASGRQQEQ FNRQDQSSSQ KAQVGPPPAL IKADVPWSAR
201: RGNLSEKDRV LKTVKGILNK LTPEKFDLLK GQLLDSGITT ADILKDVISL IFEKAVFEPT FCPMYAQLCS ELNDNLPTFP SEEPGGKEIT FKRVLLNNCQ
301: EAFEGADSLR VEIASLTGPD QEMEKRDKER IFKLRTLGNI RLIGELLKQK MVPEKIVHHI VKELLGSDKK ACPDEEHVEA ICQFFNTIGK QLDENPKSRR
401: INDTYFVQIR ELVANPQLTP RSKFMVRDLI DLRSNNWVPR RAEIKAKTIS EIHTEAEKNL GLRPGATANM RNGRNAPGGP LSPGGFSVNR PGTGGMMPGM
501: PGSRKMPGMP GLDNDNWEVQ RSRSMPRGDP LRNQGPLINK VPSINKPSPI NPRLLPQGTG ALIGKSALLG TGGPPSRPSS LTASPTPLPA QTTASPKPSS
601: ATPASVPIPD KAASSAKVIP AGLQKKTASL LEEYFGIRIL DEAQQCIEEL QSPDYHPEIV KEAINLALDK GASFVDPLVK LLEHLYTKKT FKTEDLENGC
701: LLYGSLLEDI GIDLPKAPTQ FGEVVARLIL SCGLRFEAAE GILKAMEDTF FRKAIFTSVT KTLGADPAGQ AILSSHAAVV DACNSLSI

Best Arabidopsis Sequence Match ( AT5G57870.1 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVSNLVP VQSASRFSEP DSRDWRSRST QPPPSGEERS WDNLREAKDS RYVEASQYNR QDQPNSQFSR ANISSNQGGG PAPVLVKAEV
201: PWSARRGNLS ENDRVLKTVK GILNKLTPEK YDLLKGQLIE SGITSADILK GVITLIFDKA VLEPTFCPMY AKLCSDINDQ LPTFPPAEPG DKEITFKRVL
301: LNICQEAFEG ASQLREELRQ MSAPDQEAER NDKEKLLKLK TLGNIRLIGE LLKQKMVPEK IVHHIVQELL GADEKVCPAE ENVEAICHFF KTIGKQLDGN
401: VKSKRINDVY FKRLQALSKN PQLELRLRFM VQNIIDMRSN GWVPRREEMK ARTITEIHTE AEKNLGLRPG ATANMRRGMV SSGGPVSPGP VYPGGRPGAG
501: GLMPGMPGTR RMPGMPGVDN DNWEVPRTRS MSRRDGPGPL HSPAVSKSAS MNTRLLPQGS SGIMSGKTSA LLQGSGSVSR PVTVSAERPA QSVAPLTVPV
601: PVEKPQPSGP KLSEEVLQRK TKSLLEEYFN VRLLGEALQC VEELGLPSYH PEFVKEAISL SLEKSPPVVE PIATLLEYLL SKKVVAPKDL ETGFLLYGAM
701: LDDIGIDLPK APNNFGEIVG KLILAGGVDF KLVREIIGKM EDDRFQKMVV DAAVRIVESS EQGKSLLASQ AADIEACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.