Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G354900.1 | |
| TraesCS2B01G373600.1 | |
| TraesCS2D01G353600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72730.1 | TraesCS2A01G354900.1 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | TraesCS2B01G373600.1 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | TraesCS2D01G353600.1 | AT5G57870.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G186600.1 | Wheat | cytosol | 92.87 | 71.09 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 18.05 | 61.79 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 55.11 | 58.88 |
| TraesCS6B01G144100.1 | Wheat | cytosol | 25.89 | 57.07 |
| TraesCS7B01G320000.1 | Wheat | cytosol | 55.82 | 56.76 |
| PGSC0003DMT400075336 | Potato | cytosol | 55.11 | 56.59 |
| CDY67069 | Canola | cytosol | 13.54 | 56.44 |
| PGSC0003DMT400075339 | Potato | cytosol | 55.11 | 56.17 |
| Solyc12g095990.1.1 | Tomato | nucleus | 55.11 | 56.17 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 54.87 | 55.93 |
| PGSC0003DMT400021166 | Potato | cytosol | 54.87 | 55.93 |
| CDY39079 | Canola | cytosol | 54.63 | 55.83 |
| Bra021517.1-P | Field mustard | cytosol | 54.63 | 55.83 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 54.63 | 55.69 |
| Bra027387.1-P | Field mustard | cytosol | 54.39 | 55.58 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 54.39 | 55.45 |
| Solyc07g040750.1.1 | Tomato | cytosol | 54.16 | 55.21 |
| CDY08220 | Canola | cytosol | 53.92 | 55.1 |
| Bra014365.1-P | Field mustard | cytosol | 53.92 | 55.1 |
| AT1G54270.1 | Thale cress | cytosol | 53.68 | 54.85 |
| Bra001530.1-P | Field mustard | cytosol | 54.16 | 54.81 |
| CDY10607 | Canola | cytosol | 53.44 | 54.74 |
| Bra030893.1-P | Field mustard | cytosol | 53.44 | 54.61 |
| CDY02469 | Canola | cytosol | 53.44 | 54.61 |
| CDY32586 | Canola | cytosol | 48.46 | 53.97 |
| Bra029124.1-P | Field mustard | cytosol | 52.49 | 53.9 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 81.47 | 53.59 |
| Bra037977.1-P | Field mustard | cytosol | 52.02 | 53.16 |
| CDY24057 | Canola | cytosol | 51.78 | 52.91 |
| AT1G72730.1 | Thale cress | cytosol | 52.02 | 52.9 |
| CDY33073 | Canola | cytosol | 51.31 | 52.43 |
| Bra008045.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 52.97 | 52.22 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 52.97 | 52.22 |
| AT3G13920.5 | Thale cress | cytosol | 51.31 | 51.55 |
| CDY55205 | Canola | cytosol | 51.78 | 51.54 |
| CDY72259 | Canola | cytosol | 27.08 | 51.35 |
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 10.21 | 51.19 |
| CDX97528 | Canola | cytosol | 51.31 | 50.82 |
| CDX82505 | Canola | cytosol | 51.07 | 50.23 |
| CDX75739 | Canola | cytosol | 51.31 | 49.54 |
| CDY11154 | Canola | cytosol | 22.8 | 47.52 |
| TraesCS6B01G144000.1 | Wheat | golgi | 55.82 | 42.65 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 41.09 | 42.51 |
| TraesCS6B01G472700.1 | Wheat | nucleus | 40.62 | 41.5 |
| CDY54037 | Canola | cytosol | 25.89 | 40.82 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 29.22 | 40.07 |
| CDY53867 | Canola | cytosol | 38.48 | 38.39 |
| CDX72939 | Canola | mitochondrion, nucleus | 38.48 | 34.76 |
| Bra016037.1-P | Field mustard | cytosol | 52.49 | 30.4 |
| Os02t0221300-01 | Rice | cytosol | 62.23 | 29.74 |
| OQU84655 | Sorghum | cytosol | 52.49 | 28.89 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 28.27 | 27.8 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 28.03 | 27.38 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 84.32 | 26.59 |
| Zm00001d016351_P002 | Maize | nucleus | 51.54 | 24.33 |
| Zm00001d016350_P001 | Maize | vacuole | 28.27 | 23.61 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 27.79 | 23.45 |
| KXG29825 | Sorghum | cytosol | 48.46 | 23.13 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 28.27 | 22.75 |
| CDY68148 | Canola | nucleus | 38.72 | 22.06 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 27.32 | 21.9 |
| TraesCS4B01G274200.1 | Wheat | cytosol | 24.94 | 20.75 |
| TraesCS5B01G534600.1 | Wheat | cytosol | 22.57 | 19.71 |
| TraesCS3B01G592900.1 | Wheat | plastid | 19.95 | 18.75 |
| TraesCS6B01G262800.1 | Wheat | mitochondrion | 19.24 | 13.48 |
| CDY49860 | Canola | cytosol | 3.09 | 10.4 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF534 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6B01G217800 | EnsemblPlants:TraesCS6B01G217800.1 | TIGR:cd00079 | : |
Description
No Description!
Coordinates
chr6B:-:299824234..299825879
Molecular Weight (calculated)
46372.2 Da
IEP (calculated)
7.104
GRAVY (calculated)
-0.035
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MYFVCTVPEG VDVAATVLEG ARFDGKQPVS KMTTRLTQFY EEFNTYNEIH DSFVEMGLRE NLLKGIYAYG LAMPSAIHRR GIVPFCKGLD VIQQSLSGTT
101: VTLACGVLQR LDYGSTECQA LVLVPTRDLA QETEKVIGAL GQWLGVKAHA CLGGTSIREE KQISSSSNQV IVATPGRALN MLTRRALCPD NIRMFVLDEA
201: DEILAGGLKN QIYDIIQLLP AKILFAVFST AMSNEALELC RKCMNKPMKV IVPKDEELEG FSVKQFYVKA ENEESKFQKL CDLFDTMAVM QNIIFVNARR
301: KVKPLTEKIR GRGYTVSASH GGMDQHSRDA AVQDLQSGSS RVLVTTDLHG ADALQVPVVI NYDLPAQPVQ YLRNVRRSGH PGGIGVAISF VARADERVLS
401: GIQRFCNTQM AELPSNVADL L
101: VTLACGVLQR LDYGSTECQA LVLVPTRDLA QETEKVIGAL GQWLGVKAHA CLGGTSIREE KQISSSSNQV IVATPGRALN MLTRRALCPD NIRMFVLDEA
201: DEILAGGLKN QIYDIIQLLP AKILFAVFST AMSNEALELC RKCMNKPMKV IVPKDEELEG FSVKQFYVKA ENEESKFQKL CDLFDTMAVM QNIIFVNARR
301: KVKPLTEKIR GRGYTVSASH GGMDQHSRDA AVQDLQSGSS RVLVTTDLHG ADALQVPVVI NYDLPAQPVQ YLRNVRRSGH PGGIGVAISF VARADERVLS
401: GIQRFCNTQM AELPSNVADL L
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.