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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_04s0008g00980.t01 Wine grape cytosol 22.1 70.24
CDY67069 Canola cytosol 26.22 69.31
CDY11154 Canola cytosol 44.19 58.42
VIT_04s0008g00990.t01 Wine grape cytosol 23.6 51.22
CDY72259 Canola cytosol 42.32 50.9
CDY53867 Canola cytosol 72.28 45.73
CDY49861 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 72.28 45.2
KRH61534 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 65.92 42.62
KRH52210 Soybean cytosol, endoplasmic reticulum 65.54 42.37
CDY39079 Canola cytosol 65.17 42.23
CDY08220 Canola cytosol 65.17 42.23
CDY02469 Canola cytosol 65.17 42.23
Solyc07g040750.1.1 Tomato cytosol 65.17 42.13
CDY10607 Canola cytosol 64.79 42.09
CDY55205 Canola cytosol 65.92 41.61
CDY24057 Canola cytosol 64.04 41.5
CDX97528 Canola cytosol 65.54 41.18
CDY33073 Canola cytosol 63.3 41.02
CDX82505 Canola cytosol 65.54 40.89
CDX72939 Canola mitochondrion, nucleus 70.79 40.56
CDX75739 Canola cytosol 65.92 40.37
CDY32586 Canola cytosol 55.43 39.15
GSMUA_Achr9P13950_001 Banana mitochondrion 34.08 29.64
CDY51692 Canola cytosol 44.57 29.17
CDX82280 Canola cytosol 44.57 29.17
CDY33416 Canola cytosol 44.57 29.17
CDY24617 Canola cytosol 44.57 29.17
CDY42205 Canola cytosol 44.19 28.92
CDY22956 Canola cytosol 44.19 28.92
CDY03623 Canola cytosol 40.82 26.98
CDY58940 Canola cytosol 40.82 26.98
CDY68148 Canola nucleus 71.91 25.98
TraesCS6B01G217800.1 Wheat cytosol 40.82 25.89
TraesCS6A01G186600.1 Wheat cytosol 42.32 20.55
CDY54061 Canola cytosol 23.97 19.63
CDX85725 Canola cytosol 28.46 17.19
HORVU7Hr1G073770.1 Barley cytosol, nucleus 41.2 17.19
CDY51112 Canola cytosol 28.09 17.05
CDX70383 Canola cytosol 28.46 17.0
CDY71952 Canola cytosol 23.97 15.35
CDX85726 Canola cytosol 28.09 15.31
CDX78412 Canola cytosol 28.46 15.29
CDX69778 Canola cytosol 28.09 15.15
CDY48935 Canola cytosol, plastid 26.59 14.95
CDY07205 Canola cytosol 27.34 14.87
CDX71756 Canola cytosol 26.59 14.82
CDY22577 Canola cytosol 8.24 14.77
CDY58787 Canola cytosol 26.59 14.73
CDY51147 Canola cytosol 27.34 14.72
CDX91901 Canola cytosol 26.97 14.37
CDX69777 Canola cytosol, nucleus, plasma membrane 28.09 14.34
CDY27357 Canola cytosol, plastid 26.97 14.15
CDY37067 Canola cytosol 26.97 14.12
CDX74342 Canola cytosol 26.97 14.01
OQU84655 Sorghum cytosol 39.7 13.86
CDX67556 Canola cytosol 23.22 13.14
Os02t0221300-01 Rice cytosol 41.95 12.71
CDY13319 Canola cytosol 23.22 12.65
CDX95397 Canola cytosol 23.22 12.55
Zm00001d016350_P001 Maize vacuole 23.6 12.5
CDX76225 Canola cytosol 23.22 12.5
KXG29825 Sorghum cytosol 38.2 11.56
Zm00001d016351_P002 Maize nucleus 36.33 10.87
CDY45702 Canola cytosol 7.87 10.19
CDY02574 Canola plastid 17.6 9.83
CDY47205 Canola plastid 17.6 9.83
TraesCS6A01G186800.1 Wheat cytosol 42.32 8.87
TraesCS6D01G173700.3 Wheat cytosol 43.45 8.63
TraesCS6B01G217700.1 Wheat cytosol 42.7 8.54
CDY51111 Canola cytosol 7.49 8.03
CDY23782 Canola endoplasmic reticulum, extracellular, vacuole 8.99 8.03
CDY56825 Canola cytosol 4.49 5.26
CDY37498 Canola cytosol, mitochondrion 1.12 3.26
CDY26130 Canola cytosol 1.12 2.97
CDY49860 Canola cytosol 0.37 0.8
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1GO:A0A078IVN0UniProt:A0A078IVN0EnsemblPlants:CDY54037ProteinID:CDY54037
ProteinID:CDY54037.1InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488
GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00012021001InterPro:Helicase_ATP-bdInterPro:IPR014001InterPro:P-loop_NTPasePFAM:PF00270
PFscan:PS51192PANTHER:PTHR24031PANTHER:PTHR24031:SF551SMART:SM00487SUPFAM:SSF52540UniParc:UPI0004EE9CDA
Description
BnaC08g47550DBnaC08g47550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVN0]
Coordinates
chrLK033268:+:33942..34949
Molecular Weight (calculated)
30267.2 Da
IEP (calculated)
4.944
GRAVY (calculated)
-0.175
Length
267 amino acids
Sequence
(BLAST)
001: MVNSFTLLAD LKAGRCPTTA ETSAQVRLFC LILYRLGEEG EETFNTTYAE VCDTFDAMEL RSDLLREIYA YEGFYYSAER ERGVIPFCKG IQQAQSGTGK
101: TAIFCSGVLQ QFDYTLGDYL GVKVHAYVGG TGVREDQRIL QSGVHVVVGT SGPVRQSLRA DAIKMVVLDE ADDMISRDLK DQIYDIFQLL PSMFQVGVFS
201: ATMQPEALEI KRKFMNKTVR ILVKRDELTF EGIKQFYVNV DKEEWKLETL YDLRDTSHHA GCHLCEH
Best Arabidopsis Sequence Match ( AT1G72730.1 )
(BLAST)
001: MAGMASDGTQ YDPRQFDTKM NAILGEEGEE TFYTNYDEVC DSFDAMELQP DLLRGIYAYG FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
Arabidopsis Description
TIF4A-3Eukaryotic initiation factor 4A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.