CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45702	Canola	cytosol	42.32	97.57
Bra007587.1-P	Field mustard	cytosol	94.32	94.71
CDX71756	Canola	cytosol	93.47	92.69
CDY58787	Canola	cytosol	92.63	91.29
AT3G61240.1	Thale cress	cytosol	92.63	88.35
KRH04755	Soybean	cytosol	47.58	85.28
CDY54061	Canola	cytosol	56.42	82.21
CDY37067	Canola	cytosol	85.26	79.41
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	56.42	78.82
CDY27357	Canola	cytosol, plastid	84.0	78.39
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	78.32	77.5
GSMUA_Achr2P10560_001	Banana	cytosol	77.68	75.93
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	78.53	75.81
CDY07205	Canola	cytosol	78.32	75.76
VIT_15s0046g03200.t01	Wine grape	cytosol	77.89	75.36
CDY51147	Canola	cytosol	78.53	75.2
Solyc10g017530.2.1	Tomato	nucleus	77.68	75.15
CDX91901	Canola	cytosol	78.32	74.25
KRH48170	Soybean	endoplasmic reticulum	78.32	73.96
GSMUA_Achr5P12220_001	Banana	cytosol	76.42	73.78
Solyc01g094350.2.1	Tomato	nucleus	77.26	73.69
KRH48173	Soybean	mitochondrion	77.47	73.6
KRH65096	Soybean	nucleus	77.26	73.55
KRH65098	Soybean	endoplasmic reticulum, nucleus	77.68	73.51
Os04t0533000-02	Rice	cytosol	76.84	73.29
TraesCS2B01G387200.1	Wheat	cytosol	76.84	73.15
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	77.26	72.96
TraesCS2A01G370200.2	Wheat	cytosol	76.84	72.85
CDX74342	Canola	cytosol	78.53	72.57
EER91410	Sorghum	cytosol	77.26	72.39
EER91411	Sorghum	cytosol	76.84	71.99
Os02t0641800-02	Rice	plasma membrane, plastid	76.84	71.85
TraesCS2D01G366700.1	Wheat	cytosol	76.63	71.65
HORVU6Hr1G060630.1	Barley	cytosol	77.26	70.85
Os10t0503700-01	Rice	plasma membrane	77.68	70.83
TraesCS6A01G236800.1	Wheat	cytosol	77.05	69.98
Zm00001d051268_P004	Maize	extracellular	76.84	69.92
TraesCS6D01G219400.1	Wheat	cytosol	76.84	69.79
TraesCS6B01G265300.1	Wheat	cytosol	76.63	69.6
Zm00001d017384_P008	Maize	cytosol	76.84	69.52
TraesCS1A01G174600.1	Wheat	cytosol	76.0	68.76
TraesCS1B01G189900.1	Wheat	cytosol	75.79	68.57
TraesCS1D01G164500.1	Wheat	cytosol	75.58	68.25
KRH40488	Soybean	cytosol	77.05	67.9
GSMUA_Achr11P...	Banana	cytosol	77.47	65.13
HORVU1Hr1G046020.1	Barley	cytosol	75.79	63.83
Solyc05g048850.2.1	Tomato	mitochondrion	71.37	63.13
CDY37498	Canola	cytosol, mitochondrion	8.63	44.57
CDY26130	Canola	cytosol	9.47	44.55
CDY67069	Canola	cytosol	8.42	39.6
CDY10607	Canola	cytosol	32.21	37.23
CDY32586	Canola	cytosol	29.47	37.04
CDY39079	Canola	cytosol	32.0	36.89
CDY08220	Canola	cytosol	32.0	36.89
CDY02469	Canola	cytosol	32.0	36.89
CDY24057	Canola	cytosol	31.58	36.41
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.21	35.83
CDY33073	Canola	cytosol	30.95	35.68
CDX97528	Canola	cytosol	31.79	35.53
CDY55205	Canola	cytosol	31.58	35.46
CDX82505	Canola	cytosol	31.58	35.05
CDY72259	Canola	cytosol	16.21	34.68
CDY51692	Canola	cytosol	29.68	34.56
CDY33416	Canola	cytosol	29.68	34.56
CDY22956	Canola	cytosol	29.68	34.56
CDX82280	Canola	cytosol	29.68	34.56
CDY42205	Canola	cytosol	29.68	34.56
CDX75739	Canola	cytosol	31.58	34.4
CDY24617	Canola	cytosol	29.47	34.31
CDY22577	Canola	cytosol	10.74	34.23
CDY11154	Canola	cytosol	13.89	32.67
CDY58940	Canola	cytosol	27.58	32.43
CDY51112	Canola	cytosol	29.89	32.27
CDY03623	Canola	cytosol	27.37	32.18
CDX85725	Canola	cytosol	29.89	32.13
CDX70383	Canola	cytosol	29.68	31.54
CDY71952	Canola	cytosol	26.32	29.98
CDY51111	Canola	cytosol	15.58	29.72
CDX85726	Canola	cytosol	29.89	28.98
CDX69778	Canola	cytosol	29.68	28.48
CDX78412	Canola	cytosol	29.68	28.37
CDY56825	Canola	cytosol	13.47	28.07
CDX69777	Canola	cytosol, nucleus, plasma membrane	29.68	26.96
CDX67556	Canola	cytosol	26.74	26.91
CDX76225	Canola	cytosol	27.79	26.61
CDY54037	Canola	cytosol	14.95	26.59
CDY53867	Canola	cytosol	23.58	26.54
CDX95397	Canola	cytosol	27.58	26.52
CDY13319	Canola	cytosol	26.95	26.12
CDX72939	Canola	mitochondrion, nucleus	24.0	24.46
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	14.11	22.41
CDY02574	Canola	plastid	21.68	21.55
CDY47205	Canola	plastid	21.47	21.34
CDY68148	Canola	nucleus	24.21	15.56
CDY49860	Canola	cytosol	1.47	5.6

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078IDH5	UniProt:A0A078IDH5	EnsemblPlants:CDY48935	ProteinID:CDY48935
ProteinID:CDY48935.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00092024001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0004EE31C7	SEG:seg	:	:	:	:

Description

BnaA09g39020DBnaA09g39020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDH5]

Coordinates

chrLK032801:-:116226..118816

Molecular Weight (calculated)

53904.8 Da

IEP (calculated)

8.772

GRAVY (calculated)

-0.419

Length

475 amino acids

Sequence
(BLAST)

001: MNNNRGRYQP GTGTGRGAYQ QQPQAQQHVQ RGQPQNHQQQ QWSRRAQLPG NATNANEIQT SSSQPPVASS DSNGQDWKAS LRLPPPDTRY QTADVTATKG
101: NEFEDYFLKR DLLKGIYEKG FEKPSPIQEE SIPIALTGSD ILARAKNGTG KTGAFCIPVL ERIDPNTNVI QAMILVPTRE LALQTSQVCK ELSKYLNIHV
201: MVTTGGTSLR DDIMRLHQPV HLLVGTPGRI LDLTKKGVCV LKDCTMLVMD EADKLLSAEF QPSLEELIQF LPQNRQFLMY SATFPVTVKA FKERHLRKPY
301: VINLMDQLTL MGVTQYYAFV EERQKVHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA KMVQDHRNRV FHEFRNGACR NLVCTDLFTR
401: GIDIQAVNVV INFDFPRTSE SYLHRVGRSG RFGHLGLAVN LVTYEDRFKM YQTEQELGTE IKPIPSNIDQ AIYCQ

Best Arabidopsis Sequence Match ( AT3G61240.2 )
(BLAST)

001: MNTNRGRYPP GVGTGRGAPP NPDYHQSYRQ QQPPQDQQYV QRGYSQNPQQ MQLQQQHQQQ QQQQQWSRRP QLPGNASNAN EVVQQTTQPE ASSDANGQDW
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ

Arabidopsis Description

RH12DEAD-box ATP-dependent RNA helicase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2E0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.