Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67556 | Canola | cytosol | 93.67 | 97.25 |
| CDX95397 | Canola | cytosol | 91.84 | 91.09 |
| CDX76225 | Canola | cytosol | 91.22 | 90.12 |
| AT3G53110.1 | Thale cress | cytosol | 89.39 | 88.31 |
| VIT_00s2262g00010.t01 | Wine grape | cytosol | 33.67 | 67.62 |
| KRG99590 | Soybean | endoplasmic reticulum, nucleus | 63.88 | 64.14 |
| KRG93607 | Soybean | nucleus | 63.88 | 63.23 |
| Solyc04g082790.2.1 | Tomato | plastid | 62.86 | 61.72 |
| GSMUA_Achr10P... | Banana | nucleus | 60.2 | 61.2 |
| Solyc10g085790.1.1 | Tomato | nucleus | 62.86 | 60.63 |
| PGSC0003DMT400022137 | Potato | nucleus | 63.27 | 60.31 |
| VIT_08s0007g04400.t01 | Wine grape | cytosol | 63.06 | 60.23 |
| EER95473 | Sorghum | cytosol | 57.35 | 56.31 |
| GSMUA_Achr6P14220_001 | Banana | cytosol | 60.0 | 56.21 |
| Os03t0158200-01 | Rice | cytosol, plasma membrane, plastid | 57.76 | 56.04 |
| HORVU4Hr1G072920.1 | Barley | cytosol, plasma membrane | 57.76 | 55.93 |
| TraesCS4B01G274200.1 | Wheat | cytosol | 57.55 | 55.73 |
| TraesCS4A01G340500.1 | Wheat | cytosol | 54.29 | 55.65 |
| TraesCS5D01G532700.1 | Wheat | cytosol | 54.08 | 55.56 |
| TraesCSU01G076700.1 | Wheat | cytosol | 54.08 | 55.56 |
| TraesCS4A01G031800.1 | Wheat | cytosol | 57.55 | 55.51 |
| TraesCS5B01G534600.1 | Wheat | cytosol | 54.49 | 55.39 |
| Zm00001d027728_P001 | Maize | extracellular, plasma membrane | 56.73 | 55.16 |
| TraesCS4D01G272900.1 | Wheat | cytosol | 57.14 | 55.12 |
| VIT_08s0007g04430.t01 | Wine grape | cytosol | 33.47 | 52.73 |
| CDY26130 | Canola | cytosol | 8.98 | 43.56 |
| CDY37498 | Canola | cytosol, mitochondrion | 8.16 | 43.48 |
| CDY22577 | Canola | cytosol | 10.41 | 34.23 |
| CDY22956 | Canola | cytosol | 28.16 | 33.82 |
| CDY24617 | Canola | cytosol | 28.16 | 33.82 |
| CDX82280 | Canola | cytosol | 28.16 | 33.82 |
| CDY51692 | Canola | cytosol | 27.96 | 33.58 |
| CDY33416 | Canola | cytosol | 27.96 | 33.58 |
| CDY42205 | Canola | cytosol | 27.96 | 33.58 |
| CDY02469 | Canola | cytosol | 27.96 | 33.25 |
| CDY08220 | Canola | cytosol | 27.96 | 33.25 |
| CDY39079 | Canola | cytosol | 27.96 | 33.25 |
| CDY10607 | Canola | cytosol | 27.76 | 33.09 |
| CDY33073 | Canola | cytosol | 27.76 | 33.01 |
| CDY24057 | Canola | cytosol | 27.76 | 33.01 |
| CDY32586 | Canola | cytosol | 25.31 | 32.8 |
| CDX82505 | Canola | cytosol | 28.37 | 32.48 |
| CDX97528 | Canola | cytosol | 28.16 | 32.47 |
| CDY55205 | Canola | cytosol | 27.96 | 32.39 |
| CDX75739 | Canola | cytosol | 28.57 | 32.11 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 27.96 | 32.08 |
| CDY67069 | Canola | cytosol | 6.53 | 31.68 |
| CDY54061 | Canola | cytosol | 21.02 | 31.6 |
| CDY03623 | Canola | cytosol | 25.92 | 31.44 |
| CDY58940 | Canola | cytosol | 25.71 | 31.19 |
| CDY51112 | Canola | cytosol | 26.94 | 30.0 |
| CDX85725 | Canola | cytosol | 26.73 | 29.64 |
| CDX70383 | Canola | cytosol | 26.73 | 29.31 |
| CDY72259 | Canola | cytosol | 13.27 | 29.28 |
| CDY45702 | Canola | cytosol | 12.24 | 29.13 |
| CDY48935 | Canola | cytosol, plastid | 26.12 | 26.95 |
| CDX71756 | Canola | cytosol | 26.12 | 26.72 |
| CDY58787 | Canola | cytosol | 26.12 | 26.56 |
| CDY51111 | Canola | cytosol | 13.47 | 26.51 |
| CDY71952 | Canola | cytosol | 22.45 | 26.38 |
| CDX69778 | Canola | cytosol | 26.53 | 26.26 |
| CDX78412 | Canola | cytosol | 26.53 | 26.16 |
| CDX85726 | Canola | cytosol | 26.12 | 26.12 |
| CDY11154 | Canola | cytosol | 10.61 | 25.74 |
| CDY07205 | Canola | cytosol | 25.51 | 25.46 |
| CDY51147 | Canola | cytosol | 25.71 | 25.4 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 26.53 | 24.86 |
| CDX91901 | Canola | cytosol | 25.31 | 24.75 |
| CDY27357 | Canola | cytosol, plastid | 25.51 | 24.56 |
| CDY37067 | Canola | cytosol | 25.31 | 24.31 |
| CDX74342 | Canola | cytosol | 25.1 | 23.93 |
| CDY53867 | Canola | cytosol | 20.2 | 23.46 |
| CDY56825 | Canola | cytosol | 10.82 | 23.25 |
| CDY54037 | Canola | cytosol | 12.65 | 23.22 |
| CDX72939 | Canola | mitochondrion, nucleus | 20.41 | 21.46 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 12.04 | 19.73 |
| CDY02574 | Canola | plastid | 18.37 | 18.83 |
| CDY47205 | Canola | plastid | 18.37 | 18.83 |
| CDY68148 | Canola | nucleus | 20.61 | 13.67 |
| CDY49860 | Canola | cytosol | 2.04 | 8.0 |
Protein Annotations
| MapMan:16.11.3.1 | Gene3D:3.40.50.300 | GO:A0A078FK29 | UniProt:A0A078FK29 | EnsemblPlants:CDY13319 | ProteinID:CDY13319 |
| ProteinID:CDY13319.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00071315001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF331 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0004EEC33F | SEG:seg | : | : | : |
Description
BnaC06g14380DBnaC06g14380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK29]
Coordinates
chrLK032034:-:267384..270036
Molecular Weight (calculated)
55077.8 Da
IEP (calculated)
5.091
GRAVY (calculated)
-0.428
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTVEKVST TEASSSSAEA PIPAEKTEPT TEKTKWGDVE DDDEEEANAV SELNSLSIKE ESVLDEPEDS SIKAVTSGET PYTSASRFED LNLSPELMKG
101: LYVEMKFEKP SKIQAISLPM IITPPHKHLI AQAHNGSGKT TCFVLGMLSR VDPNLREPQA LCICPTRELA IQNMEVLQKM GKFTGITAEL AVPESNHGVT
201: SARRAHVSAQ VVIGTPGTLK KWISFKKLGL NHLKILVFDE ADHMLATDGF RDDSLRIMKD IERVNPNYQV LLFSATFNET VKDFVQRTVK DPNQLFVKRE
301: DLKLDSVKQY KVVCPREQNK IEVIKDQIME LGDIGQTIIF VKTKVSAGKV HKALADMGYD VTSVHGNMTQ EDRDKIVKEF KDCLTQVLIA TDVLARGFDQ
401: QRVNLVVNYN LPTKYDTGEP DYEVYLHRVG RAGRFGRKGA VFNLLLDDRR EIEVMEKIER YFEAQVKEIK SWNSEEEYKS ALKEAGLLDE
101: LYVEMKFEKP SKIQAISLPM IITPPHKHLI AQAHNGSGKT TCFVLGMLSR VDPNLREPQA LCICPTRELA IQNMEVLQKM GKFTGITAEL AVPESNHGVT
201: SARRAHVSAQ VVIGTPGTLK KWISFKKLGL NHLKILVFDE ADHMLATDGF RDDSLRIMKD IERVNPNYQV LLFSATFNET VKDFVQRTVK DPNQLFVKRE
301: DLKLDSVKQY KVVCPREQNK IEVIKDQIME LGDIGQTIIF VKTKVSAGKV HKALADMGYD VTSVHGNMTQ EDRDKIVKEF KDCLTQVLIA TDVLARGFDQ
401: QRVNLVVNYN LPTKYDTGEP DYEVYLHRVG RAGRFGRKGA VFNLLLDDRR EIEVMEKIER YFEAQVKEIK SWNSEEEYKS ALKEAGLLDE
001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE
Arabidopsis Description
RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.