Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76225 | Canola | cytosol | 98.79 | 98.39 |
| CDY13319 | Canola | cytosol | 91.09 | 91.84 |
| CDX67556 | Canola | cytosol | 86.64 | 90.68 |
| AT3G53110.1 | Thale cress | cytosol | 89.47 | 89.11 |
| VIT_00s2262g00010.t01 | Wine grape | cytosol | 33.0 | 66.8 |
| KRG99590 | Soybean | endoplasmic reticulum, nucleus | 63.36 | 64.14 |
| KRG93607 | Soybean | nucleus | 63.36 | 63.23 |
| Solyc04g082790.2.1 | Tomato | plastid | 61.74 | 61.12 |
| GSMUA_Achr10P... | Banana | nucleus | 59.31 | 60.79 |
| Solyc10g085790.1.1 | Tomato | nucleus | 61.74 | 60.04 |
| PGSC0003DMT400022137 | Potato | nucleus | 62.15 | 59.73 |
| VIT_08s0007g04400.t01 | Wine grape | cytosol | 61.54 | 59.26 |
| EER95473 | Sorghum | cytosol | 57.09 | 56.51 |
| TraesCS4A01G340500.1 | Wheat | cytosol | 54.45 | 56.28 |
| TraesCS5D01G532700.1 | Wheat | cytosol | 54.25 | 56.18 |
| TraesCSU01G076700.1 | Wheat | cytosol | 54.25 | 56.18 |
| HORVU4Hr1G072920.1 | Barley | cytosol, plasma membrane | 57.49 | 56.13 |
| TraesCS5B01G534600.1 | Wheat | cytosol | 54.66 | 56.02 |
| TraesCS4B01G274200.1 | Wheat | cytosol | 57.29 | 55.93 |
| Os03t0158200-01 | Rice | cytosol, plasma membrane, plastid | 57.09 | 55.84 |
| TraesCS4A01G031800.1 | Wheat | cytosol | 57.29 | 55.71 |
| GSMUA_Achr6P14220_001 | Banana | cytosol | 58.91 | 55.64 |
| TraesCS4D01G272900.1 | Wheat | cytosol | 56.88 | 55.31 |
| Zm00001d027728_P001 | Maize | extracellular, plasma membrane | 56.28 | 55.16 |
| VIT_08s0007g04430.t01 | Wine grape | cytosol | 33.0 | 52.41 |
| CDY26130 | Canola | cytosol | 8.91 | 43.56 |
| CDY37498 | Canola | cytosol, mitochondrion | 8.1 | 43.48 |
| CDY22577 | Canola | cytosol | 10.12 | 33.56 |
| CDY08220 | Canola | cytosol | 27.94 | 33.5 |
| CDY22956 | Canola | cytosol | 27.53 | 33.33 |
| CDX82280 | Canola | cytosol | 27.53 | 33.33 |
| CDY24617 | Canola | cytosol | 27.53 | 33.33 |
| CDY02469 | Canola | cytosol | 27.73 | 33.25 |
| CDY39079 | Canola | cytosol | 27.73 | 33.25 |
| CDY10607 | Canola | cytosol | 27.53 | 33.09 |
| CDY33416 | Canola | cytosol | 27.33 | 33.09 |
| CDY42205 | Canola | cytosol | 27.33 | 33.09 |
| CDY51692 | Canola | cytosol | 27.33 | 33.09 |
| CDY32586 | Canola | cytosol | 25.3 | 33.07 |
| CDX97528 | Canola | cytosol | 28.34 | 32.94 |
| CDY33073 | Canola | cytosol | 27.33 | 32.77 |
| CDY24057 | Canola | cytosol | 27.33 | 32.77 |
| CDY55205 | Canola | cytosol | 27.94 | 32.62 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 28.14 | 32.55 |
| CDY54061 | Canola | cytosol | 21.46 | 32.52 |
| CDX82505 | Canola | cytosol | 28.14 | 32.48 |
| CDX75739 | Canola | cytosol | 28.34 | 32.11 |
| CDY67069 | Canola | cytosol | 6.48 | 31.68 |
| CDY03623 | Canola | cytosol | 25.51 | 31.19 |
| CDY58940 | Canola | cytosol | 25.3 | 30.94 |
| CDY45702 | Canola | cytosol | 12.75 | 30.58 |
| CDY51112 | Canola | cytosol | 27.13 | 30.45 |
| CDX85725 | Canola | cytosol | 26.92 | 30.09 |
| CDX70383 | Canola | cytosol | 26.92 | 29.75 |
| CDY72259 | Canola | cytosol | 12.96 | 28.83 |
| CDY51111 | Canola | cytosol | 14.17 | 28.11 |
| CDY48935 | Canola | cytosol, plastid | 26.52 | 27.58 |
| CDX71756 | Canola | cytosol | 26.52 | 27.35 |
| CDY58787 | Canola | cytosol | 26.52 | 27.18 |
| CDY71952 | Canola | cytosol | 22.87 | 27.1 |
| CDX69778 | Canola | cytosol | 26.92 | 26.87 |
| CDX85726 | Canola | cytosol | 26.52 | 26.73 |
| CDX78412 | Canola | cytosol | 26.72 | 26.56 |
| CDY07205 | Canola | cytosol | 26.11 | 26.27 |
| CDY11154 | Canola | cytosol | 10.73 | 26.24 |
| CDY51147 | Canola | cytosol | 26.32 | 26.21 |
| CDX91901 | Canola | cytosol | 25.91 | 25.55 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 26.92 | 25.43 |
| CDY27357 | Canola | cytosol, plastid | 26.11 | 25.34 |
| CDY37067 | Canola | cytosol | 25.91 | 25.1 |
| CDX74342 | Canola | cytosol | 25.71 | 24.71 |
| CDY56825 | Canola | cytosol | 11.13 | 24.12 |
| CDY53867 | Canola | cytosol | 20.24 | 23.7 |
| CDY54037 | Canola | cytosol | 12.55 | 23.22 |
| CDX72939 | Canola | mitochondrion, nucleus | 20.45 | 21.67 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 12.35 | 20.4 |
| CDY02574 | Canola | plastid | 17.21 | 17.78 |
| CDY47205 | Canola | plastid | 17.21 | 17.78 |
| CDY68148 | Canola | nucleus | 20.65 | 13.8 |
| CDY49860 | Canola | cytosol | 1.82 | 7.2 |
Protein Annotations
| MapMan:16.11.3.1 | Gene3D:3.40.50.300 | GO:A0A078E2N5 | EnsemblPlants:CDX95397 | ProteinID:CDX95397 | ProteinID:CDX95397.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00101122001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF331 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EC5167 | SEG:seg | : | : | : | : |
Description
BnaC04g27610D
Coordinates
chrLK031888:+:1118293..1121041
Molecular Weight (calculated)
55237.9 Da
IEP (calculated)
4.955
GRAVY (calculated)
-0.430
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDTVEKVPT AEASSSSVEA SITGENTEPT TTTTEKTKWG DVEDDDEEES DAVSELKYLS IKEPESILDE PEDSNIKAVT SGDTPYTSAS RFEDLNLSPE
101: LMKGLYVEMK FEKPSKIQAI SLPMIITPPH KHLIAQAHNG SGKTTCFVLG MLSRVDPSLR QPQALCICPT RELANQNMEV LQKMGKFTGI TAEVAVPESN
201: QGVTTARRAP VSAQVVIGTP GTLKKWMAFK KLGLNHLKIL VFDEADHMLA TDGFRDDSLR IMKDIERVNP NYQVLLFSAT FNETVKDFVQ RTVKSPNQLF
301: VKREDLALDS VKQYKVVCPK EQDKIEVIKD QIMELGDIGQ TIIFVKTKVS ASKVHKALAE MGYDVTSVHG SMSQEDRDKI VKEFKDCLTQ VLIATDVLAR
401: GFDQQRVNLV VNYNMPTKYE TGEPDYEVYL HRVGRAGRFG RKGAVFNLLL DNGNDKEVME KIERYFGAQV KEIKSWNSEE EYKSALKEAG LLDE
101: LMKGLYVEMK FEKPSKIQAI SLPMIITPPH KHLIAQAHNG SGKTTCFVLG MLSRVDPSLR QPQALCICPT RELANQNMEV LQKMGKFTGI TAEVAVPESN
201: QGVTTARRAP VSAQVVIGTP GTLKKWMAFK KLGLNHLKIL VFDEADHMLA TDGFRDDSLR IMKDIERVNP NYQVLLFSAT FNETVKDFVQ RTVKSPNQLF
301: VKREDLALDS VKQYKVVCPK EQDKIEVIKD QIMELGDIGQ TIIFVKTKVS ASKVHKALAE MGYDVTSVHG SMSQEDRDKI VKEFKDCLTQ VLIATDVLAR
401: GFDQQRVNLV VNYNMPTKYE TGEPDYEVYL HRVGRAGRFG RKGAVFNLLL DNGNDKEVME KIERYFGAQV KEIKSWNSEE EYKSALKEAG LLDE
001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE
Arabidopsis Description
RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.