Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51147 | Canola | cytosol | 97.35 | 96.37 |
| CDY54061 | Canola | cytosol | 63.95 | 96.32 |
| Bra037351.1-P | Field mustard | cytosol | 97.15 | 93.53 |
| CDX91901 | Canola | cytosol | 93.89 | 92.02 |
| CDX74342 | Canola | cytosol | 95.52 | 91.25 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 93.48 | 90.89 |
| KRH04755 | Soybean | cytosol | 48.27 | 89.43 |
| CDY45702 | Canola | cytosol | 37.07 | 88.35 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 83.1 | 85.0 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 84.11 | 84.11 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 85.13 | 83.27 |
| KRH48173 | Soybean | mitochondrion | 84.73 | 83.2 |
| KRH48170 | Soybean | endoplasmic reticulum | 84.93 | 82.9 |
| KRH65096 | Soybean | nucleus | 83.91 | 82.57 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 82.48 | 82.32 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 81.26 | 82.1 |
| Solyc10g017530.2.1 | Tomato | nucleus | 82.08 | 82.08 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 56.82 | 82.06 |
| Solyc01g094350.2.1 | Tomato | nucleus | 82.28 | 81.12 |
| Os04t0533000-02 | Rice | cytosol | 80.86 | 79.72 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 79.84 | 79.67 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 80.65 | 79.36 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 80.65 | 79.04 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 81.67 | 78.94 |
| CDX71756 | Canola | cytosol | 76.78 | 78.71 |
| CDY58787 | Canola | cytosol | 77.19 | 78.63 |
| CDY48935 | Canola | cytosol, plastid | 75.76 | 78.32 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 80.04 | 77.36 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 81.06 | 76.83 |
| CDY37067 | Canola | cytosol | 79.43 | 76.47 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 81.06 | 76.1 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 81.06 | 76.1 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 80.86 | 75.91 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 77.6 | 75.75 |
| EER91410 | Sorghum | cytosol | 78.0 | 75.54 |
| EER91411 | Sorghum | cytosol | 77.8 | 75.35 |
| Zm00001d051268_P004 | Maize | extracellular | 80.04 | 75.29 |
| CDY27357 | Canola | cytosol, plastid | 78.0 | 75.25 |
| Zm00001d017384_P008 | Maize | cytosol | 80.04 | 74.86 |
| Os10t0503700-01 | Rice | plasma membrane | 79.23 | 74.66 |
| KRH40488 | Soybean | cytosol | 81.47 | 74.21 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 78.62 | 73.52 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 78.41 | 73.33 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 78.21 | 73.0 |
| GSMUA_Achr11P... | Banana | cytosol | 81.47 | 70.8 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 74.95 | 68.53 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 78.41 | 68.26 |
| CDY26130 | Canola | cytosol | 8.76 | 42.57 |
| CDY37498 | Canola | cytosol, mitochondrion | 7.94 | 42.39 |
| CDY67069 | Canola | cytosol | 7.94 | 38.61 |
| CDY08220 | Canola | cytosol | 31.16 | 37.14 |
| CDY02469 | Canola | cytosol | 31.16 | 37.14 |
| CDY32586 | Canola | cytosol | 28.51 | 37.04 |
| CDY10607 | Canola | cytosol | 30.96 | 36.98 |
| CDY39079 | Canola | cytosol | 30.96 | 36.89 |
| CDY24057 | Canola | cytosol | 30.96 | 36.89 |
| CDY22577 | Canola | cytosol | 11.0 | 36.24 |
| CDY33073 | Canola | cytosol | 30.35 | 36.16 |
| CDY24617 | Canola | cytosol | 29.74 | 35.78 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 30.96 | 35.6 |
| CDX82280 | Canola | cytosol | 29.53 | 35.54 |
| CDY42205 | Canola | cytosol | 29.53 | 35.54 |
| CDY33416 | Canola | cytosol | 29.53 | 35.54 |
| CDY22956 | Canola | cytosol | 29.53 | 35.54 |
| CDX97528 | Canola | cytosol | 30.75 | 35.53 |
| CDY55205 | Canola | cytosol | 30.55 | 35.46 |
| CDY51692 | Canola | cytosol | 29.33 | 35.29 |
| CDX82505 | Canola | cytosol | 30.35 | 34.81 |
| CDY72259 | Canola | cytosol | 15.48 | 34.23 |
| CDX75739 | Canola | cytosol | 30.35 | 34.17 |
| CDY58940 | Canola | cytosol | 28.11 | 34.16 |
| CDY03623 | Canola | cytosol | 27.9 | 33.91 |
| CDY51112 | Canola | cytosol | 29.74 | 33.18 |
| CDX85725 | Canola | cytosol | 29.74 | 33.03 |
| CDX70383 | Canola | cytosol | 29.74 | 32.66 |
| CDY11154 | Canola | cytosol | 12.83 | 31.19 |
| CDY71952 | Canola | cytosol | 26.48 | 31.18 |
| CDY51111 | Canola | cytosol | 15.68 | 30.92 |
| CDX85726 | Canola | cytosol | 29.94 | 30.0 |
| CDX69778 | Canola | cytosol | 29.74 | 29.49 |
| CDX78412 | Canola | cytosol | 29.74 | 29.38 |
| CDY56825 | Canola | cytosol | 13.24 | 28.51 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 29.74 | 27.92 |
| CDY54037 | Canola | cytosol | 14.87 | 27.34 |
| CDY53867 | Canola | cytosol | 22.81 | 26.54 |
| CDX67556 | Canola | cytosol | 25.25 | 26.27 |
| CDX76225 | Canola | cytosol | 26.48 | 26.21 |
| CDX95397 | Canola | cytosol | 26.27 | 26.11 |
| CDY13319 | Canola | cytosol | 25.46 | 25.51 |
| CDX72939 | Canola | mitochondrion, nucleus | 23.22 | 24.46 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.26 | 23.41 |
| CDY02574 | Canola | plastid | 21.59 | 22.18 |
| CDY47205 | Canola | plastid | 21.18 | 21.76 |
| CDY68148 | Canola | nucleus | 23.42 | 15.56 |
| CDY49860 | Canola | cytosol | 1.43 | 5.6 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078EYM5 | EnsemblPlants:CDY07205 | ProteinID:CDY07205 | ProteinID:CDY07205.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00123564001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF555 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EAC29B | SEG:seg | : | : |
Description
BnaCnng02200D
Coordinates
chrLK031975:-:807372..810650
Molecular Weight (calculated)
55839.2 Da
IEP (calculated)
8.394
GRAVY (calculated)
-0.364
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNNNNNNR GRYPPGIGAG RGAINPNPNF QSRPGYQQQP PPQFQQATSQ QQQVQQQWLR RPQISGGNSN GDAVAQVEKS VLSQAIDTNS EDWKARLQLP
101: APDTRFRTED VTATKGNEFE DYFLKRELLM GIYEKGFERP SPIQEESIPI ALTGRDILAR AKNGTGKTAA FCIPVLEKID QDNNVIQALI IVPTRELALQ
201: TSQVCKELGK HLKIQVMVTT GGTSLKDDIM RLYQPVHLLV GTPGRILDLT KKGVCVLKDC SVFVMDEADK LLSQEFQPSV EHLISFLPQN RQILMFSATF
301: PVTVKDFKDR FLTNPYIINL MDELTLKGIT QFYAFVEERQ KIHCLNTLFS KLQINQSIIF CNSVNRVELL AKKITELGYS CFYIHAKMLQ DHRNRVFHDF
401: RNGACRNLVC TDLFTRGIDI QAVNVVINFD FPKTAETYLH RVGRSGRFGH LGLAVNLITY EDRFNLYRIE QELGTEIKQI PPHIDQTIYC Q
101: APDTRFRTED VTATKGNEFE DYFLKRELLM GIYEKGFERP SPIQEESIPI ALTGRDILAR AKNGTGKTAA FCIPVLEKID QDNNVIQALI IVPTRELALQ
201: TSQVCKELGK HLKIQVMVTT GGTSLKDDIM RLYQPVHLLV GTPGRILDLT KKGVCVLKDC SVFVMDEADK LLSQEFQPSV EHLISFLPQN RQILMFSATF
301: PVTVKDFKDR FLTNPYIINL MDELTLKGIT QFYAFVEERQ KIHCLNTLFS KLQINQSIIF CNSVNRVELL AKKITELGYS CFYIHAKMLQ DHRNRVFHDF
401: RNGACRNLVC TDLFTRGIDI QAVNVVINFD FPKTAETYLH RVGRSGRFGH LGLAVNLITY EDRFNLYRIE QELGTEIKQI PPHIDQTIYC Q
001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
Arabidopsis Description
RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.