Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023312.1-P | Field mustard | cytosol | 95.23 | 96.1 |
| CDX85725 | Canola | cytosol | 96.14 | 95.7 |
| AT5G11170.1 | Thale cress | cytosol | 92.5 | 95.32 |
| CDX70383 | Canola | cytosol | 94.55 | 93.06 |
| PGSC0003DMT400053566 | Potato | cytosol | 88.64 | 91.33 |
| PGSC0003DMT400052757 | Potato | cytosol | 88.41 | 90.89 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 88.18 | 90.65 |
| Solyc06g066060.2.1 | Tomato | nucleus | 83.86 | 90.0 |
| KRH44441 | Soybean | cytosol, nucleus | 86.14 | 88.97 |
| KRH47464 | Soybean | nucleus | 86.14 | 88.97 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 85.23 | 87.62 |
| KXG32708 | Sorghum | cytosol | 85.23 | 87.62 |
| KXG22711 | Sorghum | cytosol | 85.23 | 87.41 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 85.0 | 87.38 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 85.0 | 86.77 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 85.0 | 86.18 |
| Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 84.55 | 86.11 |
| Os01t0549700-01 | Rice | cytosol, plastid | 84.55 | 86.11 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 82.73 | 86.05 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 89.32 | 86.0 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 85.0 | 85.78 |
| CDX85726 | Canola | cytosol | 94.77 | 85.1 |
| GSMUA_Achr8P05380_001 | Banana | cytosol | 89.32 | 84.88 |
| CDX69778 | Canola | cytosol | 95.45 | 84.85 |
| CDY71952 | Canola | cytosol | 79.55 | 83.93 |
| CDX78412 | Canola | cytosol | 94.77 | 83.9 |
| AT5G11200.2 | Thale cress | cytosol | 92.5 | 83.74 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 95.45 | 80.31 |
| Solyc08g061000.2.1 | Tomato | nucleus | 88.41 | 80.21 |
| CDY51111 | Canola | cytosol | 45.0 | 79.52 |
| HORVU1Hr1G095100.5 | Barley | cytosol | 84.09 | 78.89 |
| Zm00001d009761_P004 | Maize | cytosol | 85.23 | 76.69 |
| GSMUA_Achr3P26010_001 | Banana | endoplasmic reticulum | 79.32 | 70.08 |
| Zm00001d011149_P002 | Maize | cytosol | 24.77 | 65.66 |
| Zm00001d011150_P005 | Maize | cytosol | 65.0 | 61.77 |
| CDY56825 | Canola | cytosol | 31.59 | 60.96 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 30.45 | 44.82 |
| CDY37498 | Canola | cytosol, mitochondrion | 9.09 | 43.48 |
| CDY26130 | Canola | cytosol | 9.55 | 41.58 |
| CDY67069 | Canola | cytosol | 8.86 | 38.61 |
| CDY45702 | Canola | cytosol | 17.27 | 36.89 |
| CDY39079 | Canola | cytosol | 33.86 | 36.16 |
| CDY33073 | Canola | cytosol | 33.64 | 35.92 |
| CDY24057 | Canola | cytosol | 33.64 | 35.92 |
| CDY54061 | Canola | cytosol | 26.36 | 35.58 |
| CDY32586 | Canola | cytosol | 30.45 | 35.45 |
| CDY02469 | Canola | cytosol | 33.18 | 35.44 |
| CDY08220 | Canola | cytosol | 33.18 | 35.44 |
| CDY10607 | Canola | cytosol | 32.95 | 35.28 |
| CDY72259 | Canola | cytosol | 17.73 | 35.14 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 32.95 | 33.96 |
| CDY55205 | Canola | cytosol | 32.5 | 33.81 |
| CDX97528 | Canola | cytosol | 32.5 | 33.65 |
| CDY22577 | Canola | cytosol | 11.36 | 33.56 |
| CDX82505 | Canola | cytosol | 32.5 | 33.41 |
| CDX82280 | Canola | cytosol | 30.91 | 33.33 |
| CDY22956 | Canola | cytosol | 30.91 | 33.33 |
| CDY33416 | Canola | cytosol | 30.68 | 33.09 |
| CDY51692 | Canola | cytosol | 30.68 | 33.09 |
| CDY42205 | Canola | cytosol | 30.68 | 33.09 |
| CDY24617 | Canola | cytosol | 30.68 | 33.09 |
| CDX75739 | Canola | cytosol | 32.73 | 33.03 |
| CDY58940 | Canola | cytosol | 29.55 | 32.18 |
| CDY03623 | Canola | cytosol | 29.32 | 31.93 |
| CDY48935 | Canola | cytosol, plastid | 32.27 | 29.89 |
| CDY58787 | Canola | cytosol | 32.73 | 29.88 |
| CDY07205 | Canola | cytosol | 33.18 | 29.74 |
| CDY11154 | Canola | cytosol | 13.64 | 29.7 |
| CDX71756 | Canola | cytosol | 32.27 | 29.65 |
| CDY51147 | Canola | cytosol | 33.18 | 29.44 |
| CDX91901 | Canola | cytosol | 32.95 | 28.94 |
| CDY37067 | Canola | cytosol | 32.73 | 28.24 |
| CDY27357 | Canola | cytosol, plastid | 32.5 | 28.09 |
| CDY54037 | Canola | cytosol | 17.05 | 28.09 |
| CDX74342 | Canola | cytosol | 32.73 | 28.02 |
| CDX67556 | Canola | cytosol | 29.55 | 27.54 |
| CDX95397 | Canola | cytosol | 30.45 | 27.13 |
| CDX76225 | Canola | cytosol | 30.45 | 27.02 |
| CDY13319 | Canola | cytosol | 30.0 | 26.94 |
| CDY53867 | Canola | cytosol | 25.68 | 26.78 |
| CDX72939 | Canola | mitochondrion, nucleus | 25.45 | 24.03 |
| CDY02574 | Canola | plastid | 20.68 | 19.04 |
| CDY47205 | Canola | plastid | 20.68 | 19.04 |
| CDY68148 | Canola | nucleus | 25.68 | 15.29 |
| CDY49860 | Canola | cytosol | 2.5 | 8.8 |
Protein Annotations
| MapMan:16.11.1.3 | MapMan:16.4.7.1.1 | Gene3D:3.40.50.300 | GO:A0A078IMF3 | UniProt:A0A078IMF3 | EnsemblPlants:CDY51112 |
| ProteinID:CDY51112 | ProteinID:CDY51112.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00098284001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF530 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EE0276 | SEG:seg | : | : |
Description
BnaCnng20150DBnaCnng20150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMF3]
Coordinates
chrLK032967:+:78882..82137
Molecular Weight (calculated)
49907.0 Da
IEP (calculated)
5.622
GRAVY (calculated)
-0.299
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPRDNEAY EEELLDYEEE EEKAPDSATK ANGDAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EGKCFSLLQH ECIPQAILGM DVICQAKSGM
101: GKTAVFVLST LQQIEPAPGQ VSALILCHTR ELAYQICNEF VRFSTYLPDT KVSVFYGGVN NKIHKDLLKN ECPHIVVGTP GRVLGLARDK DLSLKNVRHF
201: ILDECDKMLE SLDMRRDVQE IFKMTPHDKQ VMMFSATLSK EIRPVCKKFM QDPMEIYVDD EAKLTLHGLV QHYIKLSEME KNRKLNDLLD ALDFNQVVIF
301: VKSVSRAGEL NKLLIECNFP SICIHSGMSQ EERLTHYKSF KEGHKRILVA TDLVGRGIDI ERVNIVINYD MPDSADTYLH RVGRAGRFGT KGLAITFVAS
401: ASDSEVLNQV QDRFEVDIKE LPEQIDTSTY SKQLSFYQLR
101: GKTAVFVLST LQQIEPAPGQ VSALILCHTR ELAYQICNEF VRFSTYLPDT KVSVFYGGVN NKIHKDLLKN ECPHIVVGTP GRVLGLARDK DLSLKNVRHF
201: ILDECDKMLE SLDMRRDVQE IFKMTPHDKQ VMMFSATLSK EIRPVCKKFM QDPMEIYVDD EAKLTLHGLV QHYIKLSEME KNRKLNDLLD ALDFNQVVIF
301: VKSVSRAGEL NKLLIECNFP SICIHSGMSQ EERLTHYKSF KEGHKRILVA TDLVGRGIDI ERVNIVINYD MPDSADTYLH RVGRAGRFGT KGLAITFVAS
401: ASDSEVLNQV QDRFEVDIKE LPEQIDTSTY SKQLSFYQLR
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
Arabidopsis Description
DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.