Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1B01G477500.1 | Wheat | cytosol | 95.8 | 95.36 |
TraesCS1A01G443400.1 | Wheat | cytosol | 95.57 | 94.47 |
TraesCS1D01G451300.1 | Wheat | cytosol | 93.01 | 94.33 |
KXG32708 | Sorghum | cytosol | 93.94 | 94.16 |
PGSC0003DMT400053566 | Potato | cytosol | 93.01 | 93.44 |
VIT_09s0002g06660.t01 | Wine grape | cytosol | 93.01 | 93.22 |
PGSC0003DMT400052757 | Potato | cytosol | 91.38 | 91.59 |
Solyc06g066060.2.1 | Tomato | nucleus | 86.71 | 90.73 |
AT5G11170.1 | Thale cress | cytosol | 90.21 | 90.63 |
KRH61783 | Soybean | cytosol | 89.51 | 89.93 |
KRH52452 | Soybean | nucleus | 89.28 | 89.7 |
KRH47464 | Soybean | nucleus | 88.58 | 89.2 |
KRH44441 | Soybean | cytosol, nucleus | 88.58 | 89.2 |
Bra023311.1-P | Field mustard | cytosol | 87.41 | 87.82 |
Zm00001d009761_P004 | Maize | cytosol | 99.07 | 86.91 |
VIT_04s0008g05330.t01 | Wine grape | cytosol | 91.84 | 86.21 |
GSMUA_Achr8P05380_001 | Banana | cytosol | 92.77 | 85.96 |
HORVU1Hr1G095100.5 | Barley | cytosol | 93.94 | 85.93 |
Bra023312.1-P | Field mustard | cytosol | 87.18 | 85.78 |
CDX85725 | Canola | cytosol | 87.88 | 85.29 |
CDY51112 | Canola | cytosol | 87.41 | 85.23 |
CDX70383 | Canola | cytosol | 88.34 | 84.79 |
Bra008984.1-P | Field mustard | cytosol | 82.75 | 83.33 |
Solyc08g061000.2.1 | Tomato | nucleus | 93.01 | 82.27 |
AT5G11200.2 | Thale cress | cytosol | 90.21 | 79.63 |
CDY71952 | Canola | cytosol | 75.99 | 78.18 |
CDX69778 | Canola | cytosol | 88.58 | 76.77 |
CDX85726 | Canola | cytosol | 87.41 | 76.53 |
CDX78412 | Canola | cytosol | 88.58 | 76.46 |
Bra008983.1-P | Field mustard | cytosol | 83.68 | 76.06 |
CDY51111 | Canola | cytosol | 42.89 | 73.9 |
CDX69777 | Canola | cytosol, nucleus, plasma membrane | 88.58 | 72.66 |
GSMUA_Achr3P26010_001 | Banana | endoplasmic reticulum | 83.92 | 72.29 |
Bra006091.1-P | Field mustard | cytosol | 81.12 | 66.41 |
CDY56825 | Canola | cytosol | 30.54 | 57.46 |
CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 30.77 | 44.15 |
EES04512 | Sorghum | cytosol | 35.2 | 36.83 |
EES07819 | Sorghum | cytosol | 31.93 | 33.66 |
OQU76995 | Sorghum | cytosol | 35.66 | 29.59 |
EER91410 | Sorghum | cytosol | 33.8 | 28.6 |
EER91411 | Sorghum | cytosol | 33.57 | 28.4 |
EER95473 | Sorghum | cytosol | 28.21 | 24.25 |
KXG34209 | Sorghum | plastid | 22.14 | 21.44 |
OQU85369 | Sorghum | mitochondrion, plastid | 24.48 | 18.32 |
OQU84655 | Sorghum | cytosol | 27.27 | 15.29 |
KXG29825 | Sorghum | cytosol | 25.87 | 12.59 |
Protein Annotations
MapMan:16.11.1.3 | MapMan:16.4.7.1.1 | Gene3D:3.40.50.300 | UniProt:A0A1B6PAQ6 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd |
InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | EnsemblPlants:KXG22711 | ProteinID:KXG22711 |
ProteinID:KXG22711.1 | ProteinID:KXG22712.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 |
PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF530 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
SMART:SM00490 | EnsemblPlantsGene:SORBI_3009G257600 | SUPFAM:SSF52540 | UniParc:UPI0001C804FE | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr9:+:59167582..59172990
Molecular Weight (calculated)
48590.6 Da
IEP (calculated)
5.743
GRAVY (calculated)
-0.269
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGEAKENDV YEEELLDYEE DDDKTVDGSA AKPTGEVAKK GYVGIHSSGF RDFLLKPELL RAIQDCGFEH PSEVQHECIP QAILGMDVIC QAKSGMGKTA
101: VFVLSSLQQI DPVAGQVAAL VLCHTRELAY QICHEFERFS KYLPEVKVAV FYGGVHIRKH KDLLKNECPH IVVGTPGRIL ALARDKDLSL KNVRHFILDE
201: CDKMLESLDM RRDVQEIFKM TPHDKQVMMF SATLSKEIRP VCKKFMQDPM EIYVDDEAKL TLHGLVQHYI KLSEAEKNRK LNDLLDALDF NQVVIFVKSV
301: SRAAELNKLL CECNFPSICI HSGMTQEERL TRYKNFKEGH KRILVATDLV GRGIDIERVN IVINYDMPDS ADTYLHRVGR AGRFGTKGLA ITFVSSASDS
401: DVLNQVQERF EVDIKELPEQ IDTSTYMPS
101: VFVLSSLQQI DPVAGQVAAL VLCHTRELAY QICHEFERFS KYLPEVKVAV FYGGVHIRKH KDLLKNECPH IVVGTPGRIL ALARDKDLSL KNVRHFILDE
201: CDKMLESLDM RRDVQEIFKM TPHDKQVMMF SATLSKEIRP VCKKFMQDPM EIYVDDEAKL TLHGLVQHYI KLSEAEKNRK LNDLLDALDF NQVVIFVKSV
301: SRAAELNKLL CECNFPSICI HSGMTQEERL TRYKNFKEGH KRILVATDLV GRGIDIERVN IVINYDMPDS ADTYLHRVGR AGRFGTKGLA ITFVSSASDS
401: DVLNQVQERF EVDIKELPEQ IDTSTYMPS
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
Arabidopsis Description
DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.