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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G477500.1 Wheat cytosol 95.8 95.36
TraesCS1A01G443400.1 Wheat cytosol 95.57 94.47
TraesCS1D01G451300.1 Wheat cytosol 93.01 94.33
KXG32708 Sorghum cytosol 93.94 94.16
PGSC0003DMT400053566 Potato cytosol 93.01 93.44
VIT_09s0002g06660.t01 Wine grape cytosol 93.01 93.22
PGSC0003DMT400052757 Potato cytosol 91.38 91.59
Solyc06g066060.2.1 Tomato nucleus 86.71 90.73
AT5G11170.1 Thale cress cytosol 90.21 90.63
KRH61783 Soybean cytosol 89.51 89.93
KRH52452 Soybean nucleus 89.28 89.7
KRH47464 Soybean nucleus 88.58 89.2
KRH44441 Soybean cytosol, nucleus 88.58 89.2
Bra023311.1-P Field mustard cytosol 87.41 87.82
Zm00001d009761_P004 Maize cytosol 99.07 86.91
VIT_04s0008g05330.t01 Wine grape cytosol 91.84 86.21
GSMUA_Achr8P05380_001 Banana cytosol 92.77 85.96
HORVU1Hr1G095100.5 Barley cytosol 93.94 85.93
Bra023312.1-P Field mustard cytosol 87.18 85.78
CDX85725 Canola cytosol 87.88 85.29
CDY51112 Canola cytosol 87.41 85.23
CDX70383 Canola cytosol 88.34 84.79
Bra008984.1-P Field mustard cytosol 82.75 83.33
Solyc08g061000.2.1 Tomato nucleus 93.01 82.27
AT5G11200.2 Thale cress cytosol 90.21 79.63
CDY71952 Canola cytosol 75.99 78.18
CDX69778 Canola cytosol 88.58 76.77
CDX85726 Canola cytosol 87.41 76.53
CDX78412 Canola cytosol 88.58 76.46
Bra008983.1-P Field mustard cytosol 83.68 76.06
CDY51111 Canola cytosol 42.89 73.9
CDX69777 Canola cytosol, nucleus, plasma membrane 88.58 72.66
GSMUA_Achr3P26010_001 Banana endoplasmic reticulum 83.92 72.29
Bra006091.1-P Field mustard cytosol 81.12 66.41
CDY56825 Canola cytosol 30.54 57.46
CDY23782 Canola endoplasmic reticulum, extracellular, vacuole 30.77 44.15
EES04512 Sorghum cytosol 35.2 36.83
EES07819 Sorghum cytosol 31.93 33.66
OQU76995 Sorghum cytosol 35.66 29.59
EER91410 Sorghum cytosol 33.8 28.6
EER91411 Sorghum cytosol 33.57 28.4
EER95473 Sorghum cytosol 28.21 24.25
KXG34209 Sorghum plastid 22.14 21.44
OQU85369 Sorghum mitochondrion, plastid 24.48 18.32
OQU84655 Sorghum cytosol 27.27 15.29
KXG29825 Sorghum cytosol 25.87 12.59
Protein Annotations
MapMan:16.11.1.3MapMan:16.4.7.1.1Gene3D:3.40.50.300UniProt:A0A1B6PAQ6ncoils:CoilInterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005524InterPro:Helicase_ATP-bd
InterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014EnsemblPlants:KXG22711ProteinID:KXG22711
ProteinID:KXG22711.1ProteinID:KXG22712.1InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271PFscan:PS51192
PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF530InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487
SMART:SM00490EnsemblPlantsGene:SORBI_3009G257600SUPFAM:SSF52540UniParc:UPI0001C804FESEG:seg:
Description
hypothetical protein
Coordinates
chr9:+:59167582..59172990
Molecular Weight (calculated)
48590.6 Da
IEP (calculated)
5.743
GRAVY (calculated)
-0.269
Length
429 amino acids
Sequence
(BLAST)
001: MMGEAKENDV YEEELLDYEE DDDKTVDGSA AKPTGEVAKK GYVGIHSSGF RDFLLKPELL RAIQDCGFEH PSEVQHECIP QAILGMDVIC QAKSGMGKTA
101: VFVLSSLQQI DPVAGQVAAL VLCHTRELAY QICHEFERFS KYLPEVKVAV FYGGVHIRKH KDLLKNECPH IVVGTPGRIL ALARDKDLSL KNVRHFILDE
201: CDKMLESLDM RRDVQEIFKM TPHDKQVMMF SATLSKEIRP VCKKFMQDPM EIYVDDEAKL TLHGLVQHYI KLSEAEKNRK LNDLLDALDF NQVVIFVKSV
301: SRAAELNKLL CECNFPSICI HSGMTQEERL TRYKNFKEGH KRILVATDLV GRGIDIERVN IVINYDMPDS ADTYLHRVGR AGRFGTKGLA ITFVSSASDS
401: DVLNQVQERF EVDIKELPEQ IDTSTYMPS
Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
Arabidopsis Description
DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.