CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011790_P001	Maize	plastid	90.74	89.93
TraesCS3B01G592900.1	Wheat	plastid	82.62	81.7
Os01t0970600-01	Rice	plastid	87.13	81.43
TraesCS3D01G530600.1	Wheat	plastid	82.39	81.29
HORVU3Hr1G114220.3	Barley	plastid	82.17	73.54
PGSC0003DMT400023224	Potato	nucleus	45.37	62.62
KRH02098	Soybean	cytosol	32.28	62.17
GSMUA_Achr6P27990_001	Banana	plastid	67.49	61.65
VIT_05s0020g02870.t01	Wine grape	extracellular	64.56	58.85
KRH51049	Soybean	plastid	62.53	58.69
Bra023712.1-P	Field mustard	plastid	62.75	58.16
CDY47205	Canola	plastid	62.75	58.16
CDY02574	Canola	plastid	62.53	57.95
AT5G19210.2	Thale cress	plastid	61.63	57.84
Solyc01g079800.2.1	Tomato	plastid	59.59	57.52
EES04512	Sorghum	cytosol	22.57	24.39
KXG22711	Sorghum	cytosol	21.44	22.14
EES07819	Sorghum	cytosol	19.64	21.38
KXG32708	Sorghum	cytosol	20.54	21.26
OQU85369	Sorghum	mitochondrion, plastid	25.28	19.55
OQU76995	Sorghum	cytosol	22.35	19.15
EER91411	Sorghum	cytosol	21.44	18.74
EER91410	Sorghum	cytosol	21.44	18.74
EER95473	Sorghum	cytosol	18.51	16.43
OQU84655	Sorghum	cytosol	16.48	9.54
KXG29825	Sorghum	cytosol	16.93	8.5

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6Q8F9	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KXG34209	ProteinID:KXG34209	ProteinID:KXG34209.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF340	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3003G442700	SUPFAM:SSF52540
UniParc:UPI00081AB834	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:74103047..74106329

Molecular Weight (calculated)

48961.4 Da

IEP (calculated)

8.946

GRAVY (calculated)

0.050

Length

443 amino acids

Sequence
(BLAST)

001: MAVAAAFAPG SLLPTTPSTH LAPFTLRFRF SLLPRRAAVV AAAATLREVC AGRVPDHVLQ RAEEVGYVVP TEVQEQSLPL LLSGQDCILH AQTGSGKTLA
101: YLLSVFSAID FSRSSVQALV VVPTRELGMQ VTKVARLLAA KACTVMALLD GGMLKRQKSW VKAEPPAVIV ATVASLCQMV ERRAFSLQSM RVLVIDEVDF
201: IFGSSKQVSS LRKILTSYSA ASSRQTIFAS ASIPQHNRFL HDCVQHKWTK SDVVHVHVHP VQPMPSHLCH KYVICTKKER LHVLLSLLER DAPKSGIIFV
301: AEQSERSKKA GNPPSTTVVA EFLRNAYKGS LDVLLLEEDM NFNARAASFS EVKGRGFLLV STDIASRGFD LPQTSHIYNF DLPKTATDYL HRAGRTGREP
401: FSRLECGVTT LITEDEHFVL QRFQNELKFH CEELPLESMF TFS

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.