Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023712.1-P | Field mustard | plastid | 87.92 | 86.82 |
| CDY47205 | Canola | plastid | 87.71 | 86.61 |
| CDY02574 | Canola | plastid | 87.5 | 86.4 |
| KRH02098 | Soybean | cytosol | 32.84 | 67.39 |
| PGSC0003DMT400023224 | Potato | nucleus | 45.55 | 66.98 |
| VIT_05s0020g02870.t01 | Wine grape | extracellular | 66.95 | 65.02 |
| KRH51049 | Soybean | plastid | 64.19 | 64.19 |
| KXG34209 | Sorghum | plastid | 57.84 | 61.63 |
| Solyc01g079800.2.1 | Tomato | plastid | 59.11 | 60.78 |
| Zm00001d011790_P001 | Maize | plastid | 57.2 | 60.4 |
| TraesCS3B01G592900.1 | Wheat | plastid | 56.14 | 59.15 |
| TraesCS3D01G530600.1 | Wheat | plastid | 55.93 | 58.8 |
| Os01t0970600-01 | Rice | plastid | 58.05 | 57.81 |
| GSMUA_Achr6P27990_001 | Banana | plastid | 58.47 | 56.91 |
| HORVU3Hr1G114220.3 | Barley | plastid | 55.72 | 53.13 |
| AT1G54270.1 | Thale cress | cytosol | 22.88 | 26.21 |
| AT1G72730.1 | Thale cress | cytosol | 22.46 | 25.6 |
| AT3G13920.5 | Thale cress | cytosol | 22.67 | 25.54 |
| AT3G19760.1 | Thale cress | cytosol | 20.76 | 24.02 |
| AT1G51380.1 | Thale cress | cytosol | 18.43 | 22.19 |
| AT1G12770.2 | Thale cress | mitochondrion, plastid | 25.0 | 21.42 |
| AT5G11170.1 | Thale cress | cytosol | 19.28 | 21.31 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 22.25 | 20.79 |
| AT3G61240.1 | Thale cress | cytosol | 21.82 | 20.68 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 21.82 | 19.51 |
| AT5G11200.2 | Thale cress | cytosol | 19.28 | 18.72 |
| AT3G53110.1 | Thale cress | cytosol | 18.43 | 17.54 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:832041 | EMBL:AC069326 | ProteinID:AED92670.1 | ProteinID:AED92671.1 |
| ProteinID:ANM69255.1 | ArrayExpress:AT5G19210 | EnsemblPlantsGene:AT5G19210 | RefSeq:AT5G19210 | TAIR:AT5G19210 | RefSeq:AT5G19210-TAIR-G |
| EnsemblPlants:AT5G19210.2 | TAIR:AT5G19210.2 | Unigene:At.31320 | EMBL:BT004328 | EMBL:BT044060 | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_001330950.1 | RefSeq:NP_197422.2 |
| RefSeq:NP_974812.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF340 | UniProt:Q3E9C3 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI000034F243 | : | : | : | : |
Description
RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
Coordinates
chr5:+:6461268..6463866
Molecular Weight (calculated)
52814.4 Da
IEP (calculated)
8.425
GRAVY (calculated)
0.032
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.