Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45702 | Canola | cytosol | 39.96 | 96.6 |
| Bra007587.1-P | Field mustard | cytosol | 89.96 | 94.71 |
| Bra003442.1-P | Field mustard | cytosol | 89.76 | 93.71 |
| CDX71756 | Canola | cytosol | 89.36 | 92.9 |
| CDY58787 | Canola | cytosol | 89.76 | 92.74 |
| CDY48935 | Canola | cytosol, plastid | 88.35 | 92.63 |
| KRH04755 | Soybean | cytosol | 46.59 | 87.55 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 86.95 | 82.01 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 77.91 | 80.83 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 54.42 | 79.71 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 78.31 | 79.27 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 77.91 | 79.02 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 79.92 | 78.81 |
| Solyc10g017530.2.1 | Tomato | nucleus | 77.31 | 78.41 |
| KRH48170 | Soybean | endoplasmic reticulum | 79.12 | 78.33 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 76.31 | 78.19 |
| KRH48173 | Soybean | mitochondrion | 78.11 | 77.8 |
| KRH65096 | Soybean | nucleus | 77.71 | 77.56 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 78.11 | 77.49 |
| Solyc01g094350.2.1 | Tomato | nucleus | 77.31 | 77.31 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 75.5 | 76.42 |
| Os04t0533000-02 | Rice | cytosol | 76.31 | 76.31 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 77.51 | 75.98 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 75.9 | 75.75 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 75.9 | 75.45 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 77.71 | 74.71 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 76.1 | 74.61 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 75.1 | 74.35 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 77.71 | 74.0 |
| EER91410 | Sorghum | cytosol | 75.3 | 73.96 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 77.51 | 73.81 |
| Zm00001d051268_P004 | Maize | extracellular | 77.31 | 73.75 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 77.31 | 73.61 |
| EER91411 | Sorghum | cytosol | 74.9 | 73.57 |
| Zm00001d017384_P008 | Maize | cytosol | 77.11 | 73.14 |
| Os10t0503700-01 | Rice | plasma membrane | 76.31 | 72.94 |
| KRH40488 | Soybean | cytosol | 77.31 | 71.43 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 74.9 | 71.05 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 74.7 | 70.86 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 74.5 | 70.53 |
| GSMUA_Achr11P... | Banana | cytosol | 76.91 | 67.79 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 74.7 | 65.96 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 69.28 | 64.25 |
| AT1G72730.1 | Thale cress | cytosol | 31.12 | 37.44 |
| AT1G54270.1 | Thale cress | cytosol | 30.52 | 36.89 |
| AT3G13920.5 | Thale cress | cytosol | 30.92 | 36.75 |
| AT3G19760.1 | Thale cress | cytosol | 28.92 | 35.29 |
| AT1G51380.1 | Thale cress | cytosol | 26.31 | 33.42 |
| AT5G11170.1 | Thale cress | cytosol | 28.51 | 33.26 |
| AT5G11200.2 | Thale cress | cytosol | 28.51 | 29.22 |
| AT3G53110.1 | Thale cress | cytosol | 25.9 | 26.01 |
| AT5G19210.2 | Thale cress | plastid | 20.68 | 21.82 |
| AT1G12770.2 | Thale cress | mitochondrion, plastid | 22.89 | 20.69 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:825296 | UniProt:A0A178V5T0 | ProteinID:AEE80177.1 | ProteinID:AEE80178.1 |
| EMBL:AJ010464 | ArrayExpress:AT3G61240 | EnsemblPlantsGene:AT3G61240 | RefSeq:AT3G61240 | TAIR:AT3G61240 | RefSeq:AT3G61240-TAIR-G |
| EnsemblPlants:AT3G61240.1 | TAIR:AT3G61240.1 | EMBL:AY120712 | Unigene:At.20236 | EMBL:BT000038 | ProteinID:CAB71054.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0006417 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010494 | GO:GO:0010501 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0033962 | GO:GO:0051028 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_191683.1 | RefSeq:NP_974472.1 | ProteinID:OAP01246.1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF555 | UniProt:Q9M2E0 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | SUPFAM:SSF81995 | UniParc:UPI00000AC57E |
| SEG:seg | : | : | : | : | : |
Description
RH12DEAD-box ATP-dependent RNA helicase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2E0]
Coordinates
chr3:+:22666147..22669757
Molecular Weight (calculated)
56778.1 Da
IEP (calculated)
8.513
GRAVY (calculated)
-0.498
Length
498 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTNRGRYPP GVGTGRGAPP NPDYHQSYRQ QQPPQDQQYV QRGYSQNPQQ MQLQQQHQQQ QQQQQWSRRP QLPGNASNAN EVVQQTTQPE ASSDANGQDW
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.