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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d013910_P002 Maize endoplasmic reticulum, vacuole 84.95 51.47
CDY26130 Canola cytosol 20.87 42.57
CDY37498 Canola cytosol, mitochondrion 18.93 42.39
CDY54061 Canola cytosol 66.99 42.33
CDY48935 Canola cytosol, plastid 97.57 42.32
Bra003442.1-P Field mustard cytosol 97.57 42.14
CDX71756 Canola cytosol 97.57 41.96
CDY58787 Canola cytosol 97.09 41.49
KRH04755 Soybean cytosol 52.43 40.75
AT3G61240.1 Thale cress cytosol 96.6 39.96
CDY37067 Canola cytosol 94.17 38.04
CDY27357 Canola cytosol, plastid 93.2 37.72
VIT_02s0025g03790.t01 Wine grape cytosol, plastid 86.89 37.29
CDY51147 Canola cytosol 89.32 37.1
CDY07205 Canola cytosol 88.35 37.07
VIT_15s0046g03200.t01 Wine grape cytosol 87.86 36.86
Solyc10g017530.2.1 Tomato nucleus 87.38 36.66
GSMUA_Achr1P00220_001 Banana cytosol, mitochondrion 87.38 36.59
GSMUA_Achr2P10560_001 Banana cytosol 85.92 36.42
CDX91901 Canola cytosol 88.35 36.33
GSMUA_Achr5P12220_001 Banana cytosol 86.41 36.18
KRH65096 Soybean nucleus 87.38 36.07
KRH48173 Soybean mitochondrion 87.38 36.0
Os04t0533000-02 Rice cytosol 86.89 35.94
KRH65098 Soybean endoplasmic reticulum, nucleus 87.38 35.86
KRH48170 Soybean endoplasmic reticulum 87.38 35.79
Solyc01g094350.2.1 Tomato nucleus 85.92 35.54
CDX74342 Canola cytosol 88.35 35.41
TraesCS2B01G387200.1 Wheat cytosol 85.44 35.27
Os02t0641800-02 Rice plasma membrane, plastid 86.89 35.24
Zm00001d032526_P006 Maize cytosol, mitochondrion, nucleus 85.92 35.19
TraesCS2A01G370200.2 Wheat cytosol 85.44 35.13
HORVU6Hr1G060630.1 Barley cytosol 87.86 34.94
EER91411 Sorghum cytosol 85.92 34.91
EER91410 Sorghum cytosol 85.92 34.91
TraesCS2D01G366700.1 Wheat cytosol 85.44 34.65
TraesCS6D01G219400.1 Wheat cytosol 87.86 34.61
TraesCS6A01G236800.1 Wheat cytosol 87.86 34.61
TraesCS6B01G265300.1 Wheat cytosol 87.38 34.42
Zm00001d051268_P004 Maize extracellular 86.89 34.29
Os10t0503700-01 Rice plasma membrane 86.41 34.17
Zm00001d017384_P008 Maize cytosol 86.41 33.9
KRH40488 Soybean cytosol 86.89 33.21
TraesCS1B01G189900.1 Wheat cytosol 84.47 33.14
TraesCS1A01G174600.1 Wheat cytosol 84.47 33.14
TraesCS1D01G164500.1 Wheat cytosol 84.47 33.08
Solyc05g048850.2.1 Tomato mitochondrion 85.92 32.96
GSMUA_Achr11P... Banana cytosol 86.41 31.5
HORVU1Hr1G046020.1 Barley cytosol 84.47 30.85
CDY22577 Canola cytosol 21.36 29.53
CDY51111 Canola cytosol 29.61 24.5
CDY56825 Canola cytosol 25.73 23.25
CDY10607 Canola cytosol 37.38 18.73
CDY39079 Canola cytosol 37.38 18.69
CDY24057 Canola cytosol 37.38 18.69
CDY33073 Canola cytosol 37.38 18.69
CDY08220 Canola cytosol 37.38 18.69
CDY02469 Canola cytosol 37.38 18.69
CDY51692 Canola cytosol 36.41 18.38
CDY42205 Canola cytosol 36.41 18.38
CDX82280 Canola cytosol 36.41 18.38
CDY33416 Canola cytosol 36.41 18.38
CDY24617 Canola cytosol 36.41 18.38
CDY22956 Canola cytosol 36.41 18.38
CDY71952 Canola cytosol 36.89 18.23
CDX97528 Canola cytosol 37.38 18.12
CDY58940 Canola cytosol 35.44 18.07
CDY55205 Canola cytosol 36.89 17.97
CDY03623 Canola cytosol 34.95 17.82
CDY49861 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 36.89 17.8
CDX82505 Canola cytosol 36.89 17.76
CDY32586 Canola cytosol 32.52 17.72
CDX75739 Canola cytosol 36.89 17.43
CDY51112 Canola cytosol 36.89 17.27
CDX85725 Canola cytosol 36.89 17.19
CDX70383 Canola cytosol 36.89 17.0
CDY23782 Canola endoplasmic reticulum, extracellular, vacuole 24.27 16.72
CDX85726 Canola cytosol 36.89 15.51
CDX69778 Canola cytosol 36.89 15.35
CDX78412 Canola cytosol 36.89 15.29
CDX69777 Canola cytosol, nucleus, plasma membrane 36.89 14.53
CDX95397 Canola cytosol 30.58 12.75
CDX67556 Canola cytosol 29.13 12.71
CDX76225 Canola cytosol 30.58 12.7
CDY13319 Canola cytosol 29.13 12.24
CDY47205 Canola plastid 25.24 10.88
CDY02574 Canola plastid 25.24 10.88
CDY11154 Canola cytosol 10.19 10.4
CDY72259 Canola cytosol 11.16 10.36
CDY67069 Canola cytosol 4.85 9.9
CDY53867 Canola cytosol 17.48 8.53
CDX72939 Canola mitochondrion, nucleus 18.93 8.37
CDY54037 Canola cytosol 10.19 7.87
CDY68148 Canola nucleus 19.42 5.41
CDY49860 Canola cytosol 2.91 4.8
Protein Annotations
EnsemblPlants:CDY45702EnsemblPlantsGene:GSBRNA2T00082501001Gene3D:3.40.50.300InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650
InterPro:IPR014001InterPro:P-loop_NTPasePANTHER:PTHR24031PANTHER:PTHR24031:SF352PFAM:PF00271PFscan:PS51192
PFscan:PS51194ProteinID:CDY45702ProteinID:CDY45702.1SMART:SM00490SUPFAM:SSF52540UniParc:UPI0004EF0386
UniProt:A0A078I6G5MapMan:35.1::::
Description
BnaCnng13670DBnaCnng13670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6G5]
Coordinates
chrLK032633:+:199048..200436
Molecular Weight (calculated)
23713.9 Da
IEP (calculated)
8.576
GRAVY (calculated)
-0.231
Length
206 amino acids
Sequence
(BLAST)
001: MNNNRGDIMR LHQPVHLLVG TPGRILDLTK KGVCVLKDCT MLVMDEADKP LSAEQKVHCL NTLFSKLQIN QSIIFCNSVN RVELLAKKIT ELGYSCFYIH
101: AKMVQDHRNR VFHEFRNGAC RNLVCTDLFT RGIDTQAVNV VINFDFPRTS ESYLHRVGRS GRFRHLGLAL NLVTYEDRFK MYQTEQELGT EIKPIPSHID
201: QAIYCQ
Best Arabidopsis Sequence Match ( AT2G45810.1 )
(BLAST)
001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
Arabidopsis Description
RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.