Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028547.1-P | Field mustard | cytosol | 97.46 | 93.69 |
| CDY13319 | Canola | cytosol | 97.25 | 93.67 |
| CDX95397 | Canola | cytosol | 90.68 | 86.64 |
| CDX76225 | Canola | cytosol | 90.04 | 85.69 |
| AT3G53110.1 | Thale cress | cytosol | 87.92 | 83.67 |
| VIT_00s2262g00010.t01 | Wine grape | cytosol | 34.96 | 67.62 |
| KRG99590 | Soybean | endoplasmic reticulum, nucleus | 64.41 | 62.3 |
| KRG93607 | Soybean | nucleus | 64.62 | 61.62 |
| Solyc04g082790.2.1 | Tomato | plastid | 63.35 | 59.92 |
| GSMUA_Achr10P... | Banana | nucleus | 60.38 | 59.13 |
| Solyc10g085790.1.1 | Tomato | nucleus | 63.35 | 58.86 |
| PGSC0003DMT400022137 | Potato | nucleus | 63.77 | 58.56 |
| VIT_08s0007g04400.t01 | Wine grape | cytosol | 63.56 | 58.48 |
| EER95473 | Sorghum | cytosol | 57.63 | 54.51 |
| TraesCS5B01G534600.1 | Wheat | cytosol | 55.51 | 54.36 |
| GSMUA_Achr6P14220_001 | Banana | cytosol | 60.17 | 54.3 |
| TraesCS5D01G532700.1 | Wheat | cytosol | 54.87 | 54.3 |
| TraesCSU01G076700.1 | Wheat | cytosol | 54.87 | 54.3 |
| TraesCS4A01G340500.1 | Wheat | cytosol | 54.87 | 54.18 |
| TraesCS4B01G274200.1 | Wheat | cytosol | 57.63 | 53.75 |
| HORVU4Hr1G072920.1 | Barley | cytosol, plasma membrane | 57.63 | 53.75 |
| Os03t0158200-01 | Rice | cytosol, plasma membrane, plastid | 57.42 | 53.66 |
| TraesCS4A01G031800.1 | Wheat | cytosol | 57.63 | 53.54 |
| Zm00001d027728_P001 | Maize | extracellular, plasma membrane | 56.78 | 53.17 |
| TraesCS4D01G272900.1 | Wheat | cytosol | 56.78 | 52.76 |
| VIT_08s0007g04430.t01 | Wine grape | cytosol | 34.53 | 52.41 |
| CDY37498 | Canola | cytosol, mitochondrion | 8.69 | 44.57 |
| CDY26130 | Canola | cytosol | 9.53 | 44.55 |
| CDY22577 | Canola | cytosol | 10.81 | 34.23 |
| CDY22956 | Canola | cytosol | 29.45 | 34.07 |
| CDY24617 | Canola | cytosol | 29.45 | 34.07 |
| CDX82280 | Canola | cytosol | 29.45 | 34.07 |
| CDY51692 | Canola | cytosol | 29.24 | 33.82 |
| CDY42205 | Canola | cytosol | 29.24 | 33.82 |
| CDY33416 | Canola | cytosol | 29.24 | 33.82 |
| CDY08220 | Canola | cytosol | 29.45 | 33.74 |
| CDY02469 | Canola | cytosol | 29.24 | 33.5 |
| CDY39079 | Canola | cytosol | 29.24 | 33.5 |
| CDY10607 | Canola | cytosol | 29.03 | 33.33 |
| CDX97528 | Canola | cytosol | 29.66 | 32.94 |
| CDY55205 | Canola | cytosol | 29.45 | 32.86 |
| CDY33073 | Canola | cytosol | 28.6 | 32.77 |
| CDY24057 | Canola | cytosol | 28.6 | 32.77 |
| CDX82505 | Canola | cytosol | 29.66 | 32.71 |
| CDY32586 | Canola | cytosol | 26.06 | 32.54 |
| CDX75739 | Canola | cytosol | 29.87 | 32.34 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.03 | 32.08 |
| CDY03623 | Canola | cytosol | 27.12 | 31.68 |
| CDY67069 | Canola | cytosol | 6.78 | 31.68 |
| CDY54061 | Canola | cytosol | 21.82 | 31.6 |
| CDY58940 | Canola | cytosol | 26.91 | 31.44 |
| CDY51112 | Canola | cytosol | 27.54 | 29.55 |
| CDY72259 | Canola | cytosol | 13.77 | 29.28 |
| CDX85725 | Canola | cytosol | 27.33 | 29.19 |
| CDY45702 | Canola | cytosol | 12.71 | 29.13 |
| CDX70383 | Canola | cytosol | 27.33 | 28.86 |
| CDY48935 | Canola | cytosol, plastid | 26.91 | 26.74 |
| CDY71952 | Canola | cytosol | 23.52 | 26.62 |
| CDX71756 | Canola | cytosol | 26.91 | 26.51 |
| CDY58787 | Canola | cytosol | 26.91 | 26.35 |
| CDX69778 | Canola | cytosol | 27.33 | 26.06 |
| CDX78412 | Canola | cytosol | 27.12 | 25.75 |
| CDY11154 | Canola | cytosol | 11.02 | 25.74 |
| CDX85726 | Canola | cytosol | 26.69 | 25.71 |
| CDY51111 | Canola | cytosol | 13.56 | 25.7 |
| CDY07205 | Canola | cytosol | 26.27 | 25.25 |
| CDY51147 | Canola | cytosol | 26.48 | 25.2 |
| CDX91901 | Canola | cytosol | 26.27 | 24.75 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 27.33 | 24.67 |
| CDY27357 | Canola | cytosol, plastid | 26.27 | 24.36 |
| CDY37067 | Canola | cytosol | 26.06 | 24.12 |
| CDX74342 | Canola | cytosol | 26.06 | 23.93 |
| CDY53867 | Canola | cytosol | 20.97 | 23.46 |
| CDY56825 | Canola | cytosol | 11.23 | 23.25 |
| CDY54037 | Canola | cytosol | 13.14 | 23.22 |
| CDX72939 | Canola | mitochondrion, nucleus | 21.19 | 21.46 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 12.5 | 19.73 |
| CDY02574 | Canola | plastid | 19.07 | 18.83 |
| CDY47205 | Canola | plastid | 19.07 | 18.83 |
| CDY68148 | Canola | nucleus | 21.4 | 13.67 |
| CDY49860 | Canola | cytosol | 2.12 | 8.0 |
Protein Annotations
| MapMan:16.11.3.1 | Gene3D:3.40.50.300 | GO:A0A078BSD8 | EnsemblPlants:CDX67556 | ProteinID:CDX67556 | ProteinID:CDX67556.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00098689001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF331 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EF251F | SEG:seg | : | : | : | : |
Description
BnaA07g15960D
Coordinates
chrLK031787:+:917199..919731
Molecular Weight (calculated)
53062.8 Da
IEP (calculated)
6.687
GRAVY (calculated)
-0.387
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTVEKVST TEASSSSAEA PIPAEKTEPT QRRRQSGAII KEESVLDEPE DSSIKAVTSG ETPYTSASRF EDLNLSPELM KGLYVEMKFE KPSKIQAISL
101: PMIITPPHKH LIAQAHNGSG KTTCFVLGML SRVDPSLREP QALCICPTRE LAIQNLEVLQ KMGKFTGITA ELAVPESNHG VTSARRAHVS AQVVIGTPGT
201: LKKWIAFKKL GLNHLKILVF DEADHMLATD GFRDDSLRIM KDIERVNPKY QVLLFSATFN ETVKDFVQRT VKDPNQLFVK REDLKLDSVK QYKVVCPREQ
301: NKIEVIKDQI MELGDIGQTI IFVKTKVSAG KVHKALADMG YDVTSVHGNM TQEDRDKIVK EFKDCLTQVL IATDVLARGF DQQRVNLVVN YNLPTKYDTG
401: EPDYEVYLHR VGRAGRFGRK GAVFNLLLDD KREIEVMEKI ERYFEAQVKE IKSWNSEEEY KSALKEAGLL DE
101: PMIITPPHKH LIAQAHNGSG KTTCFVLGML SRVDPSLREP QALCICPTRE LAIQNLEVLQ KMGKFTGITA ELAVPESNHG VTSARRAHVS AQVVIGTPGT
201: LKKWIAFKKL GLNHLKILVF DEADHMLATD GFRDDSLRIM KDIERVNPKY QVLLFSATFN ETVKDFVQRT VKDPNQLFVK REDLKLDSVK QYKVVCPREQ
301: NKIEVIKDQI MELGDIGQTI IFVKTKVSAG KVHKALADMG YDVTSVHGNM TQEDRDKIVK EFKDCLTQVL IATDVLARGF DQQRVNLVVN YNLPTKYDTG
401: EPDYEVYLHR VGRAGRFGRK GAVFNLLLDD KREIEVMEKI ERYFEAQVKE IKSWNSEEEY KSALKEAGLL DE
001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE
Arabidopsis Description
RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.