Factsheet for HORVU4Hr1G072920.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G274200.1	Wheat	cytosol	98.62	98.62
TraesCS4A01G031800.1	Wheat	cytosol	98.62	98.23
TraesCS4D01G272900.1	Wheat	cytosol	97.23	96.85
Zm00001d027728_P001	Maize	extracellular, plasma membrane	86.36	86.71
EER95473	Sorghum	cytosol	85.38	86.57
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	83.99	84.16
GSMUA_Achr10P...	Banana	nucleus	67.39	70.75
VIT_00s2262g00010.t01	Wine grape	cytosol	31.62	65.57
GSMUA_Achr6P14220_001	Banana	cytosol	67.39	65.2
KRG99590	Soybean	endoplasmic reticulum, nucleus	58.3	60.45
Solyc04g082790.2.1	Tomato	plastid	58.89	59.72
Solyc10g085790.1.1	Tomato	nucleus	58.7	58.46
KRG93607	Soybean	nucleus	56.92	58.18
PGSC0003DMT400022137	Potato	nucleus	59.09	58.17
CDY13319	Canola	cytosol	55.93	57.76
CDX67556	Canola	cytosol	53.75	57.63
CDX95397	Canola	cytosol	56.13	57.49
Bra040687.1-P	Field mustard	cytosol	56.32	57.46
CDX76225	Canola	cytosol	56.13	57.26
Bra028547.1-P	Field mustard	cytosol	55.53	57.23
AT3G53110.1	Thale cress	cytosol	55.34	56.45
VIT_08s0007g04400.t01	Wine grape	cytosol	56.72	55.95
VIT_08s0007g04430.t01	Wine grape	cytosol	32.02	52.09
HORVU6Hr1G094560.1	Barley	cytosol	26.68	32.77
HORVU3Hr1G015500.1	Barley	cytosol	9.29	30.72
HORVU3Hr1G015460.1	Barley	cytosol	9.29	30.72
HORVU3Hr1G050890.1	Barley	cytosol	8.89	27.78
HORVU6Hr1G020910.1	Barley	cytosol	27.67	27.72
HORVU1Hr1G095100.5	Barley	cytosol	23.52	25.37
HORVU6Hr1G060630.1	Barley	cytosol	24.11	23.55
HORVU1Hr1G046020.1	Barley	cytosol	25.1	22.52
HORVU3Hr1G114220.3	Barley	plastid	16.8	17.17
HORVU6Hr1G059910.1	Barley	mitochondrion	19.76	16.64
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	20.55	16.25

Protein Annotations

MapMan:16.11.3.1	Gene3D:3.40.50.300	EMBL:AK371061	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F2E4I7
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737
GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008186
GO:GO:0009408	GO:GO:0009409	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0016020
GO:GO:0016787	GO:GO:0016973	EnsemblPlantsGene:HORVU4Hr1G072920	EnsemblPlants:HORVU4Hr1G072920.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF331	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002007C05	SEG:seg	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E4I7]

Coordinates

chrchr4H:+:586897060..586903117

Molecular Weight (calculated)

55967.8 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.351

Length

506 amino acids

Sequence
(BLAST)

001: MADAGAAKPE PEKKSWADVE EEEEAKAKAE AEAELAAASA SSSSSAPIEP VVEAQAKQIE ALSLSVPEDD GGPDGPPLLD DSDDSQIQAV TSGGTVYESA
101: TTFEDVKLTP ELLKGLHDEM GFSRPSKIQA ITLPMILTPP YKDLVAQAHN GSGKTTCFVL GMLSRVDPNR KVPQAICICP TRELAQQNKS VLMRMGKFTG
201: ITCACAIPSS QKEYMPISKM APVTDQVVIG TSGTLTKWIT HKKLATREIK ILVFDEADHM LAEEGFKTDS LRIMKDIQNS AGGCQVLLFS ATFNEKVKEF
301: VTRVIKDGNQ IFVKKEDLTL EKVKQYKVRV PDEAAKIEVI RDKIFEFGQK VGQVIIFVRT RNSTKNVHNA LTKEDYVCSS IQGSLDQAER EKVIQEFKDG
401: YTKVLISTDV LARGFDQAQV NLVINYDMPI KYNTRDEPDY EVYLHRIGRA GRFGRKGAVF NLLCGQTDEV VMTKIEDYFQ HKVPEVPNWK SEDNFETALK
501: DAGLLE

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.