Factsheet for VIT_08s0007g04400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2262g00010.t01	Wine grape	cytosol	43.47	91.39
VIT_08s0007g04430.t01	Wine grape	cytosol	48.15	79.42
Solyc04g082790.2.1	Tomato	plastid	66.47	68.34
Solyc10g085790.1.1	Tomato	nucleus	67.25	67.91
PGSC0003DMT400022137	Potato	nucleus	66.86	66.73
KRG99590	Soybean	endoplasmic reticulum, nucleus	61.99	65.16
GSMUA_Achr10P...	Banana	nucleus	60.23	64.11
CDX67556	Canola	cytosol	58.48	63.56
CDY13319	Canola	cytosol	60.23	63.06
Bra028547.1-P	Field mustard	cytosol	60.04	62.73
KRG93607	Soybean	nucleus	60.43	62.63
CDX76225	Canola	cytosol	59.84	61.9
Bra040687.1-P	Field mustard	cytosol	59.84	61.9
CDX95397	Canola	cytosol	59.26	61.54
AT3G53110.1	Thale cress	cytosol	58.09	60.08
GSMUA_Achr6P14220_001	Banana	cytosol	59.45	58.32
TraesCS5B01G534600.1	Wheat	cytosol	54.19	57.68
TraesCS5D01G532700.1	Wheat	cytosol	53.61	57.65
TraesCS4A01G340500.1	Wheat	cytosol	53.61	57.53
TraesCSU01G076700.1	Wheat	cytosol	53.41	57.44
TraesCS4B01G274200.1	Wheat	cytosol	56.14	56.92
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	55.95	56.72
EER95473	Sorghum	cytosol	55.17	56.71
TraesCS4A01G031800.1	Wheat	cytosol	55.75	56.3
Zm00001d027728_P001	Maize	extracellular, plasma membrane	55.17	56.15
TraesCS4D01G272900.1	Wheat	cytosol	55.17	55.71
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	54.78	55.64
VIT_11s0016g01920.t01	Wine grape	cytosol	27.88	34.62
VIT_04s0008g00980.t01	Wine grape	cytosol	5.65	34.52
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	27.68	34.38
VIT_04s0008g00990.t01	Wine grape	cytosol	8.19	34.15
VIT_06s0080g00550.t01	Wine grape	cytosol	26.9	33.25
VIT_09s0002g01760.t01	Wine grape	cytosol	27.68	32.57
VIT_09s0002g06660.t01	Wine grape	cytosol	25.73	30.84
VIT_04s0008g05330.t01	Wine grape	cytosol	26.12	29.32
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	27.1	28.96
VIT_15s0046g03200.t01	Wine grape	cytosol	26.9	28.11
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	23.39	21.54
VIT_05s0020g02870.t01	Wine grape	extracellular	17.74	18.72

Protein Annotations

EntrezGene:100257270	wikigene:100257270	MapMan:16.11.3.1	Gene3D:3.40.50.300	ProteinID:CCB55373	ProteinID:CCB55373.1
InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HKF1	EMBL:FN595991	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100257270	wikigene:LOC100257270	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF331	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGR:TC53859
TIGR:TC60510	UniParc:UPI00021098F7	ArrayExpress:VIT_08s0007g04400	EnsemblPlantsGene:VIT_08s0007g04400	EnsemblPlants:VIT_08s0007g04400.t01	RefSeq:XP_002264701
RefSeq:XP_002264701.2	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:18352774..18359936

Molecular Weight (calculated)

57063.1 Da

IEP (calculated)

7.743

GRAVY (calculated)

-0.225

Length

513 amino acids

Sequence
(BLAST)

001: MAEDAPKPKQ LWGDVEDDPP SSSSTPAVDL PVESLTIHDE AKEAESLDEP KDSSIQAVTS GDTPYTSAST FEDLNLSPEL LRGIYSEMKF ERPSKIQAIS
101: LPMILTPPYK NLIAQAHNGS GKTTCFVLGM LSRVDPKLQV PQALCICPTR ELAIQNLEVL RKMGKHTGIE SECAIPMDSA NYTSISQRPP VKAQVVIGTP
201: GTVKKWMSHR KLGISNMKIL VFDEADHMLA EDGFKDDSLR IMKAIEKSGA QCQVLLFSAT FNDTVKNFVT RIVKDYNQMF VKKEELSLQS VKQYKVKCPD
301: ELSKILVIKD KIFEIGQKLG QTIIFVRTKN SAGMLHKALV DFGYEVTTIQ GALRQEDRDK IIKEFKDGLT QVLISTDLLA RGFDQSRVNL VVNYDLPLKY
401: GTQAEPDYEV YLHRIGRAGR FGRKGAVFNL LCSDKDNILI SKIENHFGVQ IAECRPPPFV DQSLGRDMQP APGVPLLPFM RRYAAMLSLF CHSGASGMVT
501: FRANVLYGHV RGV

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.