Factsheet for VIT_11s0016g01920.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	96.85	96.85
GSMUA_Achr2P19480_001	Banana	cytosol	86.2	96.22
GSMUA_AchrUn_...	Banana	cytosol	85.96	95.95
GSMUA_Achr8P24670_001	Banana	cytosol	86.44	94.95
EES04512	Sorghum	cytosol	94.19	94.88
TraesCS6B01G144100.1	Wheat	cytosol	43.83	94.76
Zm00001d015251_P001	Maize	extracellular	93.95	94.63
Zm00001d036480_P001	Maize	plasma membrane, plastid	94.67	94.44
KRH47074	Soybean	nucleus	94.43	94.43
Zm00001d014673_P001	Maize	plastid	94.43	94.2
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	94.19	94.19
TraesCS7D01G412200.1	Wheat	golgi, nucleus	94.19	93.96
Os06t0701100-02	Rice	extracellular, nucleus, plastid	94.19	93.96
Os02t0146600-01	Rice	plastid	93.95	93.72
TraesCS7B01G320000.1	Wheat	cytosol	93.95	93.72
TraesCS7A01G419400.1	Wheat	cytosol	93.95	93.72
KRH10048	Soybean	cytosol, endoplasmic reticulum	93.7	93.7
KRH23270	Soybean	cytosol	93.7	93.7
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	93.22	93.22
GSMUA_Achr10P...	Banana	cytosol	86.44	93.21
KRH44102	Soybean	nucleus	94.67	92.87
PGSC0003DMT400012518	Potato	cytosol	92.74	92.74
GSMUA_Achr7P19690_001	Banana	cytosol	78.69	92.07
VIT_09s0002g01760.t01	Wine grape	cytosol	95.64	90.6
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	94.43	88.24
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	94.43	88.24
VIT_04s0008g00990.t01	Wine grape	cytosol	25.67	86.18
VIT_04s0008g00980.t01	Wine grape	cytosol	16.95	83.33
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	86.2	81.46
HORVU6Hr1G020910.1	Barley	cytosol	94.43	77.23
OQU76995	Sorghum	cytosol	94.43	75.44
TraesCS6B01G144000.1	Wheat	golgi	94.43	70.78
VIT_06s0080g00550.t01	Wine grape	cytosol	61.99	61.69
VIT_09s0002g06660.t01	Wine grape	cytosol	35.59	34.35
VIT_00s2262g00010.t01	Wine grape	cytosol	18.89	31.97
VIT_04s0008g05330.t01	Wine grape	cytosol	35.35	31.95
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	36.08	31.04
VIT_15s0046g03200.t01	Wine grape	cytosol	36.32	30.55
VIT_08s0007g04400.t01	Wine grape	cytosol	34.62	27.88
VIT_08s0007g04430.t01	Wine grape	cytosol	19.61	26.05
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	30.02	22.26
VIT_05s0020g02870.t01	Wine grape	extracellular	25.42	21.6

Protein Annotations

EntrezGene:100244028	wikigene:100244028	MapMan:17.4.2.1	Gene3D:3.40.50.300	EMBL:AM460190	ProteinID:CAN70196
ProteinID:CAN70196.1	ProteinID:CBI27885	ProteinID:CBI27885.3	UniProt:D7TCM7	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN595756
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006413	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010468	GO:GO:0010501	GO:GO:0016787
GO:GO:0019538	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EntrezGene:LOC100244028	wikigene:LOC100244028	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGR:TC54965	UniParc:UPI00015C8808
ArrayExpress:VIT_11s0016g01920	EnsemblPlantsGene:VIT_11s0016g01920	EnsemblPlants:VIT_11s0016g01920.t01	unigene:Vvi.7533	RefSeq:XP_002281247	RefSeq:XP_002281247.2

Description

No Description!

Coordinates

chr11:+:1560268..1562677

Molecular Weight (calculated)

46882.4 Da

IEP (calculated)

5.216

GRAVY (calculated)

-0.222

Length

413 amino acids

Sequence
(BLAST)

001: MAGVAPEGSQ FDTRNYDAKM TELLSTDGQD FFTSYDEVYD SFDSMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGILQ
101: QLDYGLVECQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILSSGVH VVVGTPGRVF DMLRRQSLRP DYIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PSKVQVGVFS ATMPPEALEI TRKFMNKPVR ILVKRDELTL EGIKQFYVNV DKEEWKLETL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR
301: SRDHTVSATH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINFDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTRDDERM LFDIQRFYNV
401: VIEELPSNVA DLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.