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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 17189339
nucleus: 18203134
plasma membrane: 18260611
extracellular: 18372294
cytosol: 19685898
plastid: 21433289
nucleus: 23777608
nucleus: 26035336
extracellular: 26072143
extracellular: 26194822
plasma membrane: 27800704
plastid: 27992503
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID: 18203134 doi
G Li, BR Nallamilli, F Tan, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19685898 doi
KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID: 26194822 doi
WK Cho, TK Hyun, D Kumar, Y Rim, XY Chen, Y Jo, S Kim, KW Lee, ZY Park, WJ Lucas, JY Kim
Department of Industrial Plant Science and Technology, College of Agricultural, Life and Environmental Sciences, Chungbuk National University, Cheongju 361-763, Korea., Department of Life Science, Gwangju Institute of Science and Technology, Gwangju 500-712, Korea., Department of Plant Biology, University of California, Davis, CA 95616, USA., Division of Applied Life Science (BK21plus), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Korea.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G320000.1 Wheat cytosol 98.31 98.31
TraesCS7A01G419400.1 Wheat cytosol 98.31 98.31
TraesCS7D01G412200.1 Wheat golgi, nucleus 98.07 98.07
TraesCS6B01G144100.1 Wheat cytosol 44.93 97.38
Os02t0146600-01 Rice plastid 97.1 97.1
VIT_04s0008g01000.t01 Wine grape cytosol, extracellular 94.44 94.67
VIT_11s0016g01920.t01 Wine grape cytosol 93.96 94.19
KRH12430 Soybean cytosol 93.96 94.19
KRH37426 Soybean cytosol, endoplasmic reticulum 93.96 94.19
GSMUA_Achr6P01750_001 Banana cytosol, plasma membrane 93.72 93.95
GSMUA_Achr8P24670_001 Banana cytosol 85.27 93.88
KRH02682 Soybean cytosol, endoplasmic reticulum, nucleus 92.27 92.49
KRH19215 Soybean cytosol, endoplasmic reticulum, nucleus 92.03 92.25
KRH23270 Soybean cytosol 91.55 91.77
KRH10048 Soybean cytosol, endoplasmic reticulum 91.55 91.77
GSMUA_Achr10P... Banana cytosol 84.78 91.64
TraesCS6D01G105000.1 Wheat endoplasmic reticulum, vacuole 97.83 91.63
TraesCS6A01G116200.1 Wheat endoplasmic reticulum, vacuole 97.83 91.63
KRH47074 Soybean nucleus 91.3 91.53
Solyc06g062800.2.1 Tomato cytosol, nucleus, unclear 91.3 91.53
PGSC0003DMT400012518 Potato cytosol 90.82 91.04
GSMUA_Achr7P19690_001 Banana cytosol 77.54 90.93
KRH44102 Soybean nucleus 91.55 90.02
VIT_09s0002g01760.t01 Wine grape cytosol 93.0 88.3
HORVU6Hr1G020910.1 Barley cytosol 98.31 80.59
TraesCS6B01G144000.1 Wheat golgi 97.83 73.5
Os03t0566800-01 Rice cytosol, nucleus, plasma membrane 62.56 64.11
Os01t0639100-01 Rice nucleus 62.08 63.61
Os01t0549700-01 Rice cytosol, plastid 36.47 34.95
Os01t0550000-01 Rice cytosol, nucleus, plasma membrane 36.23 34.72
Os04t0533000-02 Rice cytosol 37.44 31.12
Os02t0641800-02 Rice plasma membrane, plastid 36.96 30.12
Os10t0503700-01 Rice plasma membrane 36.72 29.17
Os03t0158200-01 Rice cytosol, plasma membrane, plastid 32.85 26.93
Os02t0221300-01 Rice cytosol 57.0 26.79
Os01t0970600-01 Rice plastid 24.15 21.1
Os03t0219700-01 Rice plastid 27.05 19.55
Os02t0636300-01 Rice nucleus 26.81 19.37
Protein Annotations
MapMan:17.4.2.1Gene3D:3.40.50.300EntrezGene:4341966EMBL:AK099927EMBL:AK105454EMBL:AK119234
ProteinID:BAB21260.1ProteinID:BAD53769.1ProteinID:BAD54014.1ProteinID:BAF20395.1ProteinID:BAS99344.1ProteinID:BAS99345.1
EMBL:D12627InterPro:DEAD/DEAH_box_helicase_domProteinID:EAZ38180.1GO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003743GO:GO:0003824GO:GO:0004004GO:GO:0004386GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730
GO:GO:0005737GO:GO:0006139GO:GO:0006412GO:GO:0006413GO:GO:0008135GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0010468GO:GO:0010501GO:GO:0016787
GO:GO:0019538InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014
EnsemblPlantsGene:Os06g0701100EnsemblPlants:Os06t0701100-02InterPro:P-loop_NTPaseUniProt:P35683PFAM:PF00270PFAM:PF00271
ScanProsite:PS00039PFscan:PS51192PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF365
InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SUPFAM:SSF52540UniParc:UPI0000446E6E
RefSeq:XP_015643172.1:::::
Description
EUKARYOTIC INITIATION FACTOR 4A-1Eukaryotic initiation factor 4A (eIF4A) (eIF-4A). (Os06t0701100-02);Similar to cDNA clone:001-114-H08, full insert sequence. (Os06t0701100-03)
Coordinates
chr6:-:29503817..29507313
Molecular Weight (calculated)
47090.7 Da
IEP (calculated)
5.228
GRAVY (calculated)
-0.247
Length
414 amino acids
Sequence
(BLAST)
001: MAGMAPEGSQ FDAKHYDSKM QELLNQGETE EFFTSYDEVH ESFDDMGLQE NLLRGIYAYG FEKPSAIQQR GIVPFCKGLD VIQQAQSGTG KTATFCSGIL
101: QQLDYAVVEC QALVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILASGV HVVVGTPGRV FDMLRRQSLR PDYIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKIQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VEKEEWKLDT LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RGRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINYDLPTQ PENYLHRIGR SGRFGRKGVA INFVTRDDER MLFDIQRFYN
401: VVIEELPANV ADLL
Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)
001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.