Factsheet for PGSC0003DMT400012518

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	99.52	99.52
TraesCS6B01G144100.1	Wheat	cytosol	43.83	94.76
PGSC0003DMT400021166	Potato	cytosol	92.98	92.98
GSMUA_Achr8P24670_001	Banana	cytosol	84.5	92.82
PGSC0003DMT400088289	Potato	cytosol	92.98	92.75
VIT_11s0016g01920.t01	Wine grape	cytosol	92.74	92.74
KRH10048	Soybean	cytosol, endoplasmic reticulum	92.74	92.74
KRH23270	Soybean	cytosol	92.74	92.74
PGSC0003DMT400075336	Potato	cytosol	92.01	92.68
KRH47074	Soybean	nucleus	92.49	92.49
PGSC0003DMT400075339	Potato	cytosol	92.49	92.49
GSMUA_Achr2P19480_001	Banana	cytosol	82.57	92.16
EES04512	Sorghum	cytosol	91.04	91.71
Zm00001d036480_P001	Maize	plasma membrane, plastid	91.77	91.55
Zm00001d014673_P001	Maize	plastid	91.53	91.3
TraesCS7D01G412200.1	Wheat	golgi, nucleus	91.53	91.3
TraesCS7B01G320000.1	Wheat	cytosol	91.53	91.3
TraesCS7A01G419400.1	Wheat	cytosol	91.53	91.3
Zm00001d015251_P001	Maize	extracellular	90.56	91.22
GSMUA_AchrUn_...	Banana	cytosol	81.6	91.08
Os02t0146600-01	Rice	plastid	91.28	91.06
KRH44102	Soybean	nucleus	92.74	90.97
Os06t0701100-02	Rice	extracellular, nucleus, plastid	91.04	90.82
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	90.31	90.31
GSMUA_Achr10P...	Banana	cytosol	83.05	89.56
VIT_09s0002g01760.t01	Wine grape	cytosol	93.7	88.76
GSMUA_Achr7P19690_001	Banana	cytosol	75.79	88.67
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	91.53	85.52
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	91.53	85.52
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	82.32	77.8
HORVU6Hr1G020910.1	Barley	cytosol	91.28	74.65
OQU76995	Sorghum	cytosol	91.77	73.31
TraesCS6B01G144000.1	Wheat	golgi	91.53	68.6
PGSC0003DMT400019783	Potato	cytosol	59.81	60.39
PGSC0003DMT400052757	Potato	cytosol	36.08	34.81
PGSC0003DMT400053566	Potato	cytosol	35.59	34.43
PGSC0003DMT400022137	Potato	nucleus	33.41	26.85
PGSC0003DMT400023224	Potato	nucleus	18.89	24.3
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	27.36	20.62

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1A1C3	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400004884	PGSC:PGSC0003DMG400004884	EnsemblPlants:PGSC0003DMT400012518	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295F3C1	:

Description

Eukaryotic initiation factor 4A-8 [Source:PGSC_GENE;Acc:PGSC0003DMG400004884]

Coordinates

chr6:+:48614304..48616658

Molecular Weight (calculated)

46820.5 Da

IEP (calculated)

5.547

GRAVY (calculated)

-0.194

Length

413 amino acids

Sequence
(BLAST)

001: MARLATDGAQ FDARQFDSKM NDLLAAEGKD FFTSYDEVYD SFDAMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGILQ
101: QLDYGLIQCQ SLVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILAAGVH VVVGTPGRVF DMLRRQSLRP DCLRMFVLDE ADEMLSRGFK
201: DQIYDIFQML PTKVQVGVFS ATMPPEALDI TRKFMNKPVR ILVKRDELTL EGIKQFYVNV DKEEWKLETL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR
301: SRDHTVSATH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINYDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTTDDERM LFDIQKFYNV
401: VIEELPSNVA DLL

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.