Factsheet for PGSC0003DMT400053566

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052757	Potato	cytosol	96.02	95.79
VIT_09s0002g06660.t01	Wine grape	cytosol	95.32	95.09
AT5G11170.1	Thale cress	cytosol	93.68	93.68
KXG22711	Sorghum	cytosol	93.44	93.01
KRH47464	Soybean	nucleus	92.74	92.96
KRH44441	Soybean	cytosol, nucleus	92.74	92.96
Bra023311.1-P	Field mustard	cytosol	90.87	90.87
TraesCS1B01G477500.1	Wheat	cytosol	91.57	90.72
KXG32708	Sorghum	cytosol	90.87	90.65
TraesCS1D01G451300.1	Wheat	cytosol	89.23	90.07
TraesCS1A01G443400.1	Wheat	cytosol	91.33	89.86
Bra023312.1-P	Field mustard	cytosol	91.57	89.68
TraesCS3B01G224400.1	Wheat	cytosol	89.23	89.02
VIT_04s0008g05330.t01	Wine grape	cytosol	95.08	88.84
TraesCS3D01G204400.1	Wheat	cytosol	88.99	88.78
CDX85725	Canola	cytosol	91.8	88.69
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	89.7	88.66
CDY51112	Canola	cytosol	91.33	88.64
Os01t0549700-01	Rice	cytosol, plastid	89.46	88.43
CDX70383	Canola	cytosol	92.27	88.14
Solyc08g061000.2.1	Tomato	nucleus	99.53	87.63
Bra008984.1-P	Field mustard	cytosol	86.89	87.09
GSMUA_Achr8P05380_001	Banana	cytosol	94.15	86.83
TraesCS3A01G200100.1	Wheat	cytosol	88.52	86.7
AT5G11200.2	Thale cress	cytosol	93.68	82.3
HORVU1Hr1G095100.5	Barley	cytosol	89.93	81.88
Zm00001d009761_P004	Maize	cytosol	92.51	80.78
CDY71952	Canola	cytosol	78.22	80.1
CDX69778	Canola	cytosol	92.04	79.39
CDX78412	Canola	cytosol	92.27	79.28
CDX85726	Canola	cytosol	90.87	79.18
Bra008983.1-P	Field mustard	cytosol	86.89	78.6
CDY51111	Canola	cytosol	44.5	76.31
CDX69777	Canola	cytosol, nucleus, plasma membrane	91.8	74.95
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	84.54	72.49
Bra006091.1-P	Field mustard	cytosol	84.78	69.08
Zm00001d011149_P002	Maize	cytosol	26.23	67.47
Zm00001d011150_P005	Maize	cytosol	67.92	62.63
CDY56825	Canola	cytosol	30.91	57.89
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	30.91	44.15
PGSC0003DMT400012518	Potato	cytosol	34.43	35.59
PGSC0003DMT400088289	Potato	cytosol	34.43	35.51
PGSC0003DMT400075336	Potato	cytosol	33.96	35.37
PGSC0003DMT400075339	Potato	cytosol	34.19	35.35
PGSC0003DMT400021166	Potato	cytosol	34.19	35.35
PGSC0003DMT400019783	Potato	cytosol	31.15	32.52
PGSC0003DMT400022137	Potato	nucleus	28.81	23.93
PGSC0003DMT400023224	Potato	nucleus	14.52	19.31
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	24.12	18.8

Protein Annotations

EntrezGene:102589835	MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1BV48	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400020781	PGSC:PGSC0003DMG400020781	EnsemblPlants:PGSC0003DMT400053566	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000296B111	RefSeq:XP_006361727.1	RefSeq:XP_006361728.1	SEG:seg	:

Description

DEAD-box ATP-dependent RNA helicase 56 [Source:PGSC_GENE;Acc:PGSC0003DMG400020781]

Coordinates

chr8:-:31973518..31981598

Molecular Weight (calculated)

48407.3 Da

IEP (calculated)

5.366

GRAVY (calculated)

-0.268

Length

427 amino acids

Sequence
(BLAST)

001: MGENKENDAY EEELLDYEED DEKIPDSATK VNGESAKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP VAGQVAALVL CHTRELAYQI CHEFERFSTY LPDIKVAVFY GGVNIKLHKE LLKNECPHIV VGTPGRILAL ARDKDLSLRN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SETEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLME CNFPSICIHS GMSQEERLTR YKGFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVSSASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.