Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011149_P002 | Maize | cytosol | 38.15 | 57.23 |
| CDY56825 | Canola | cytosol | 51.0 | 55.7 |
| Bra023311.1-P | Field mustard | cytosol | 83.13 | 48.48 |
| AT5G11170.1 | Thale cress | cytosol | 81.12 | 47.31 |
| CDX70383 | Canola | cytosol | 82.33 | 45.86 |
| CDX85725 | Canola | cytosol | 80.72 | 45.48 |
| CDY51112 | Canola | cytosol | 79.52 | 45.0 |
| PGSC0003DMT400052757 | Potato | cytosol | 77.11 | 44.86 |
| PGSC0003DMT400053566 | Potato | cytosol | 76.31 | 44.5 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 76.31 | 44.39 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 74.3 | 43.74 |
| CDY37498 | Canola | cytosol, mitochondrion | 16.06 | 43.48 |
| KXG32708 | Sorghum | cytosol | 73.9 | 42.99 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 74.3 | 42.92 |
| KXG22711 | Sorghum | cytosol | 73.9 | 42.89 |
| KRH44441 | Soybean | cytosol, nucleus | 73.09 | 42.72 |
| KRH47464 | Soybean | nucleus | 73.09 | 42.72 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 74.3 | 42.63 |
| CDX85726 | Canola | cytosol | 83.53 | 42.45 |
| Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 73.09 | 42.13 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 72.29 | 42.06 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 72.29 | 42.06 |
| Os01t0549700-01 | Rice | cytosol, plastid | 72.69 | 41.9 |
| CDY26130 | Canola | cytosol | 16.87 | 41.58 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 76.31 | 41.58 |
| AT5G11200.2 | Thale cress | cytosol | 81.12 | 41.56 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 72.69 | 41.51 |
| CDY71952 | Canola | cytosol | 69.48 | 41.49 |
| CDX78412 | Canola | cytosol | 82.33 | 41.25 |
| Solyc06g066060.2.1 | Tomato | nucleus | 67.87 | 41.22 |
| CDX69778 | Canola | cytosol | 81.53 | 41.01 |
| GSMUA_Achr8P05380_001 | Banana | cytosol | 75.9 | 40.82 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 82.33 | 39.2 |
| Solyc08g061000.2.1 | Tomato | nucleus | 76.31 | 39.18 |
| HORVU1Hr1G095100.5 | Barley | cytosol | 72.69 | 38.59 |
| Zm00001d009761_P004 | Maize | cytosol | 74.7 | 38.04 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 42.17 | 35.12 |
| GSMUA_Achr3P26010_001 | Banana | endoplasmic reticulum | 68.67 | 34.34 |
| CDY22577 | Canola | cytosol | 19.28 | 32.21 |
| CDY45702 | Canola | cytosol | 24.5 | 29.61 |
| Zm00001d011150_P005 | Maize | cytosol | 38.55 | 20.73 |
| CDY32586 | Canola | cytosol | 26.91 | 17.72 |
| CDY54061 | Canola | cytosol | 22.89 | 17.48 |
| CDY39079 | Canola | cytosol | 28.51 | 17.23 |
| CDY02469 | Canola | cytosol | 28.11 | 16.99 |
| CDY08220 | Canola | cytosol | 28.11 | 16.99 |
| CDY24057 | Canola | cytosol | 28.11 | 16.99 |
| CDY33073 | Canola | cytosol | 28.11 | 16.99 |
| CDY10607 | Canola | cytosol | 27.71 | 16.79 |
| CDY24617 | Canola | cytosol | 27.31 | 16.67 |
| CDX82280 | Canola | cytosol | 27.31 | 16.67 |
| CDY22956 | Canola | cytosol | 27.31 | 16.67 |
| CDY42205 | Canola | cytosol | 27.31 | 16.67 |
| CDY33416 | Canola | cytosol | 27.31 | 16.67 |
| CDY51692 | Canola | cytosol | 27.31 | 16.67 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 27.71 | 16.16 |
| CDY58940 | Canola | cytosol | 26.1 | 16.09 |
| CDY03623 | Canola | cytosol | 25.7 | 15.84 |
| CDY51147 | Canola | cytosol | 31.33 | 15.73 |
| CDY07205 | Canola | cytosol | 30.92 | 15.68 |
| CDY48935 | Canola | cytosol, plastid | 29.72 | 15.58 |
| CDX91901 | Canola | cytosol | 31.33 | 15.57 |
| CDX97528 | Canola | cytosol | 26.51 | 15.53 |
| CDX71756 | Canola | cytosol | 29.72 | 15.45 |
| CDY55205 | Canola | cytosol | 26.1 | 15.37 |
| CDX82505 | Canola | cytosol | 26.1 | 15.19 |
| CDY58787 | Canola | cytosol | 29.32 | 15.15 |
| CDX75739 | Canola | cytosol | 26.51 | 15.14 |
| CDX74342 | Canola | cytosol | 30.92 | 14.98 |
| CDX95397 | Canola | cytosol | 28.11 | 14.17 |
| CDY37067 | Canola | cytosol | 28.92 | 14.12 |
| CDX76225 | Canola | cytosol | 28.11 | 14.11 |
| CDY27357 | Canola | cytosol, plastid | 28.51 | 13.95 |
| CDX67556 | Canola | cytosol | 25.7 | 13.56 |
| CDY13319 | Canola | cytosol | 26.51 | 13.47 |
| CDY47205 | Canola | plastid | 16.87 | 8.79 |
| CDY02574 | Canola | plastid | 16.87 | 8.79 |
| CDY53867 | Canola | cytosol | 14.06 | 8.29 |
| CDY49860 | Canola | cytosol | 4.02 | 8.0 |
| CDY54037 | Canola | cytosol | 8.03 | 7.49 |
| CDX72939 | Canola | mitochondrion, nucleus | 13.65 | 7.3 |
| CDY68148 | Canola | nucleus | 14.06 | 4.74 |
| CDY72259 | Canola | cytosol | 3.21 | 3.6 |
| CDY11154 | Canola | cytosol | 1.61 | 1.98 |
| CDY67069 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY51111 | EnsemblPlantsGene:GSBRNA2T00098283001 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase |
| ncoils:Coil | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF530 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:CDY51111 |
| ProteinID:CDY51111.1 | SEG:seg | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EF31B1 | UniProt:A0A078IM96 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaCnng20140DBnaCnng20140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM96]
Coordinates
chrLK032967:-:72221..78438
Molecular Weight (calculated)
28292.6 Da
IEP (calculated)
4.936
GRAVY (calculated)
-0.245
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDVRDNEAY EEELLDYEEE DEKVLDSGNK VTVKKRLAAN TLSSDICSFQ PMEIYVDDEA KLALHGFVQH YIKLSEMEKN RKLNDLLDAL DFNQVVIFVK
101: SVSSVNLLPT ACLLIECNFP SICIHSGMSQ EERLTHYKSF KEGHKRILVA TDLVGRGIDI ERVNIVINYD MPDSADTYLH RVGRAGRFGT KGLAITFVAS
201: ASDSEVLNQV QARFEVDIKQ LPENIDTSTY SKRRVSSFFY HFFCPGFNI
101: SVSSVNLLPT ACLLIECNFP SICIHSGMSQ EERLTHYKSF KEGHKRILVA TDLVGRGIDI ERVNIVINYD MPDSADTYLH RVGRAGRFGT KGLAITFVAS
201: ASDSEVLNQV QARFEVDIKQ LPENIDTSTY SKRRVSSFFY HFFCPGFNI
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
Arabidopsis Description
RH15DEAD-box ATP-dependent RNA helicase 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.