Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42205 | Canola | cytosol | 99.75 | 99.75 |
| CDY24617 | Canola | cytosol | 99.75 | 99.75 |
| CDY51692 | Canola | cytosol | 99.75 | 99.75 |
| CDY22956 | Canola | cytosol | 99.26 | 99.26 |
| CDX82280 | Canola | cytosol | 99.26 | 99.26 |
| AT3G19760.1 | Thale cress | cytosol | 96.81 | 96.81 |
| Solyc11g033280.1.1 | Tomato | cytosol, nucleus, plastid | 83.82 | 87.47 |
| GSMUA_Achr9P23810_001 | Banana | cytosol | 82.6 | 86.86 |
| KRH12197 | Soybean | nucleus | 85.54 | 85.96 |
| VIT_06s0080g00550.t01 | Wine grape | cytosol | 87.25 | 85.78 |
| KRH37217 | Soybean | endoplasmic reticulum | 85.54 | 85.75 |
| Os03t0566800-01 | Rice | cytosol, nucleus, plasma membrane | 84.31 | 85.15 |
| TraesCS2A01G552800.1 | Wheat | cytosol | 76.96 | 85.09 |
| EES07819 | Sorghum | cytosol | 84.8 | 85.01 |
| Os01t0639100-01 | Rice | nucleus | 84.07 | 84.9 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 84.31 | 84.52 |
| PGSC0003DMT400019783 | Potato | cytosol | 84.56 | 84.35 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 81.86 | 82.06 |
| TraesCS2D01G554300.1 | Wheat | nucleus | 77.94 | 81.96 |
| HORVU6Hr1G094560.1 | Barley | cytosol | 82.11 | 81.31 |
| TraesCS6D01G401900.1 | Wheat | nucleus | 81.86 | 80.87 |
| TraesCS6A01G416700.1 | Wheat | nucleus | 81.86 | 80.87 |
| TraesCS2D01G553400.1 | Wheat | cytosol | 80.15 | 80.74 |
| TraesCS6B01G472700.1 | Wheat | nucleus | 81.37 | 80.58 |
| GSMUA_Achr3P27120_001 | Banana | cytosol | 64.22 | 78.68 |
| Zm00001d018542_P006 | Maize | cytosol | 84.31 | 77.65 |
| CDY58940 | Canola | cytosol | 75.49 | 76.24 |
| CDY03623 | Canola | cytosol | 75.25 | 75.99 |
| CDY37498 | Canola | cytosol, mitochondrion | 15.93 | 70.65 |
| HORVU3Hr1G015500.1 | Barley | cytosol | 25.98 | 69.28 |
| HORVU3Hr1G015460.1 | Barley | cytosol | 25.98 | 69.28 |
| CDY26130 | Canola | cytosol | 16.91 | 68.32 |
| CDY22577 | Canola | cytosol | 24.51 | 67.11 |
| HORVU3Hr1G050890.1 | Barley | cytosol | 26.23 | 66.05 |
| CDY08220 | Canola | cytosol | 61.03 | 60.44 |
| CDY39079 | Canola | cytosol | 61.03 | 60.44 |
| CDY10607 | Canola | cytosol | 60.54 | 60.1 |
| CDY02469 | Canola | cytosol | 60.54 | 59.95 |
| CDY24057 | Canola | cytosol | 59.31 | 58.74 |
| CDY32586 | Canola | cytosol | 54.41 | 58.73 |
| CDY33073 | Canola | cytosol | 58.82 | 58.25 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 60.05 | 57.38 |
| CDY55205 | Canola | cytosol | 59.31 | 57.21 |
| CDX97528 | Canola | cytosol | 58.82 | 56.47 |
| CDX82505 | Canola | cytosol | 58.82 | 56.07 |
| CDX75739 | Canola | cytosol | 58.82 | 55.05 |
| CDY67069 | Canola | cytosol | 13.48 | 54.46 |
| CDY72259 | Canola | cytosol | 26.23 | 48.2 |
| CDY11154 | Canola | cytosol | 22.55 | 45.54 |
| CDY54037 | Canola | cytosol | 29.17 | 44.57 |
| CDY53867 | Canola | cytosol | 42.65 | 41.23 |
| CDY54061 | Canola | cytosol | 30.15 | 37.73 |
| CDY45702 | Canola | cytosol | 18.38 | 36.41 |
| CDX72939 | Canola | mitochondrion, nucleus | 41.42 | 36.27 |
| CDY51112 | Canola | cytosol | 33.09 | 30.68 |
| CDX85725 | Canola | cytosol | 33.09 | 30.54 |
| CDX70383 | Canola | cytosol | 33.09 | 30.2 |
| CDY71952 | Canola | cytosol | 30.64 | 29.98 |
| CDY48935 | Canola | cytosol, plastid | 34.56 | 29.68 |
| CDX71756 | Canola | cytosol | 34.8 | 29.65 |
| CDY07205 | Canola | cytosol | 35.54 | 29.53 |
| CDX91901 | Canola | cytosol | 36.03 | 29.34 |
| CDX67556 | Canola | cytosol | 33.82 | 29.24 |
| CDY51147 | Canola | cytosol | 35.54 | 29.23 |
| CDY58787 | Canola | cytosol | 34.31 | 29.05 |
| CDX74342 | Canola | cytosol | 35.78 | 28.4 |
| CDY13319 | Canola | cytosol | 33.58 | 27.96 |
| CDX85726 | Canola | cytosol | 33.09 | 27.55 |
| CDX69778 | Canola | cytosol | 33.33 | 27.47 |
| CDX95397 | Canola | cytosol | 33.09 | 27.33 |
| CDY51111 | Canola | cytosol | 16.67 | 27.31 |
| CDX76225 | Canola | cytosol | 33.09 | 27.22 |
| CDX78412 | Canola | cytosol | 33.09 | 27.16 |
| CDY27357 | Canola | cytosol, plastid | 33.58 | 26.92 |
| CDY37067 | Canola | cytosol | 33.58 | 26.86 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 33.33 | 26.0 |
| CDY56825 | Canola | cytosol | 13.48 | 24.12 |
| CDY68148 | Canola | nucleus | 41.91 | 23.14 |
| CDY02574 | Canola | plastid | 24.26 | 20.71 |
| CDY47205 | Canola | plastid | 24.26 | 20.71 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.46 | 19.73 |
| CDY49860 | Canola | cytosol | 2.94 | 9.6 |
Protein Annotations
| MapMan:17.3.1.1.1 | Gene3D:3.40.50.300 | GO:A0A078H6B7 | UniProt:A0A078H6B7 | EnsemblPlants:CDY33416 | ProteinID:CDY33416 |
| ProteinID:CDY33416.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00054317001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF57 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI00018908C0 | SEG:seg | : | : | : |
Description
BnaC01g33090DBnaC01g33090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6B7]
Coordinates
chrLK032314:+:26889..29529
Molecular Weight (calculated)
46004.5 Da
IEP (calculated)
5.779
GRAVY (calculated)
-0.301
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEANPGRGG GRRGGGPMDD DKLVFETTEG IEPITNFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQIVDTS
101: SREVQALILS PTRELASQTE KTIQAIGLHA NIQAHACIGG KSVGEDIRKL ENGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDWL SEKMRTNNFT
301: VSSMHGDMPQ KERDEIMNQF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
101: SREVQALILS PTRELASQTE KTIQAIGLHA NIQAHACIGG KSVGEDIRKL ENGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDWL SEKMRTNNFT
301: VSSMHGDMPQ KERDEIMNQF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
Arabidopsis Description
EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.