CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67069	Canola	cytosol	19.53	90.1
CDY53867	Canola	cytosol	81.33	89.81
CDY11154	Canola	cytosol	38.2	88.12
VIT_04s0008g00990.t01	Wine grape	cytosol	21.67	82.11
VIT_04s0008g00980.t01	Wine grape	cytosol	14.59	80.95
CDY72259	Canola	cytosol	37.34	78.38
CDY49860	Canola	cytosol	20.39	76.0
CDY54037	Canola	cytosol	40.56	70.79
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.66	68.38
CDY39079	Canola	cytosol	56.87	64.32
CDY02469	Canola	cytosol	56.87	64.32
CDY10607	Canola	cytosol	56.65	64.23
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.87	64.16
CDY08220	Canola	cytosol	56.65	64.08
KRH52210	Soybean	cytosol, endoplasmic reticulum	56.22	63.44
CDY55205	Canola	cytosol	57.51	63.36
CDY24057	Canola	cytosol	55.58	62.86
CDX97528	Canola	cytosol	57.3	62.82
Solyc07g040750.1.1	Tomato	cytosol	55.36	62.47
CDY33073	Canola	cytosol	54.94	62.14
CDX82505	Canola	cytosol	56.65	61.68
CDX75739	Canola	cytosol	57.08	61.01
CDY32586	Canola	cytosol	49.36	60.85
CDY68148	Canola	nucleus	93.35	58.86
GSMUA_Achr9P13950_001	Banana	mitochondrion	28.33	43.0
CDY22956	Canola	cytosol	36.48	41.67
CDY33416	Canola	cytosol	36.27	41.42
CDY24617	Canola	cytosol	36.27	41.42
CDY51692	Canola	cytosol	36.27	41.42
CDX82280	Canola	cytosol	36.27	41.42
CDY42205	Canola	cytosol	36.05	41.18
CDY58940	Canola	cytosol	33.91	39.11
CDY03623	Canola	cytosol	33.91	39.11
TraesCS6B01G217800.1	Wheat	cytosol	34.76	38.48
TraesCS6A01G186600.1	Wheat	cytosol	36.27	30.73
CDY54061	Canola	cytosol	20.6	29.45
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	36.05	26.25
CDX85725	Canola	cytosol	24.25	25.57
CDY51112	Canola	cytosol	24.03	25.45
CDX70383	Canola	cytosol	24.25	25.28
CDY22577	Canola	cytosol	7.94	24.83
CDY48935	Canola	cytosol, plastid	24.46	24.0
CDX71756	Canola	cytosol	24.46	23.8
CDY71952	Canola	cytosol	21.03	23.5
CDY58787	Canola	cytosol	24.25	23.44
CDY07205	Canola	cytosol	24.46	23.22
CDY51147	Canola	cytosol	24.68	23.19
CDX78412	Canola	cytosol	24.25	22.74
CDX85726	Canola	cytosol	23.82	22.65
CDX69778	Canola	cytosol	24.03	22.63
CDX91901	Canola	cytosol	24.25	22.55
CDY37067	Canola	cytosol	24.46	22.35
CDY27357	Canola	cytosol, plastid	24.25	22.2
CDX74342	Canola	cytosol	24.03	21.79
CDX69777	Canola	cytosol, nucleus, plasma membrane	24.03	21.41
CDX67556	Canola	cytosol	21.46	21.19
CDX76225	Canola	cytosol	21.89	20.56
CDX95397	Canola	cytosol	21.67	20.45
CDY13319	Canola	cytosol	21.46	20.41
OQU84655	Sorghum	cytosol	32.83	20.0
CDY45702	Canola	cytosol	8.37	18.93
Os02t0221300-01	Rice	cytosol	34.33	18.16
KXG29825	Sorghum	cytosol	30.9	16.33
CDY37498	Canola	cytosol, mitochondrion	3.22	16.3
Zm00001d016351_P002	Maize	nucleus	31.12	16.26
CDY26130	Canola	cytosol	3.43	15.84
Zm00001d016350_P001	Maize	vacuole	16.95	15.67
CDY02574	Canola	plastid	15.88	15.48
CDY47205	Canola	plastid	15.67	15.27
CDY51111	Canola	cytosol	7.3	13.65
TraesCS6A01G186800.1	Wheat	cytosol	36.48	13.34
TraesCS6D01G173700.3	Wheat	cytosol	36.91	12.8
TraesCS6B01G217700.1	Wheat	cytosol	36.05	12.58
CDY56825	Canola	cytosol	5.79	11.84
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	7.3	11.37

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078C9R4	EnsemblPlants:CDX72939	ProteinID:CDX72939	ProteinID:CDX72939.1
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF3511	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00103364001	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF12023	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF551	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0004EDE990
SEG:seg	:	:	:	:	:

Description

BnaC06g33870D

Coordinates

chrLK031797:-:1240881..1247491

Molecular Weight (calculated)

53019.1 Da

IEP (calculated)

9.441

GRAVY (calculated)

-0.415

Length

466 amino acids

Sequence
(BLAST)

001: MLKPRKRRKQ FLKKYINFRI SIIISYVDNK KIVHIHECTF MAGMASEGTQ YDPRQFDTKM NAILGEEGQE TFYTTYDEVC DSFDTMELRS DLLRGIYAYG
101: FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL QQLDYTLLQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILHSGV
201: HVVVGTPGRV FDMLRRQSLP ADAIKMFVLD EADEMLSRGF KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMSKPV RILVKRDELT LEGIKQFYVN
301: VDKEEWKLET LCDLYETLAI TQSERQFLEV VASEEMFRSK SCREEITGRR SSITNKYHCL TSNGEAAPSP TNQLPPVMMR SYSASTYSPY KNPTTVRDRD
401: SPNSKSKRRA SKAKKGYKGL CEAEIQRKKR VAGYNVYGVE GKVKGSMKKS FKWFKETCSN AVYGLW

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.