Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000965.1-P | Field mustard | cytosol | 99.03 | 99.22 |
| CDX91901 | Canola | cytosol | 96.11 | 98.6 |
| CDY54061 | Canola | cytosol | 61.09 | 96.32 |
| CDY07205 | Canola | cytosol | 91.25 | 95.52 |
| CDY51147 | Canola | cytosol | 91.63 | 94.96 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 92.41 | 94.06 |
| KRH04755 | Soybean | cytosol | 46.11 | 89.43 |
| CDY45702 | Canola | cytosol | 35.41 | 88.35 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 81.13 | 86.88 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 82.3 | 86.15 |
| KRH48170 | Soybean | endoplasmic reticulum | 83.46 | 85.29 |
| KRH48173 | Soybean | mitochondrion | 82.68 | 85.0 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 82.88 | 84.86 |
| Solyc10g017530.2.1 | Tomato | nucleus | 80.74 | 84.52 |
| KRH65096 | Soybean | nucleus | 81.71 | 84.17 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 79.96 | 83.54 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 78.6 | 83.13 |
| Solyc01g094350.2.1 | Tomato | nucleus | 80.35 | 82.93 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 54.28 | 82.06 |
| Os04t0533000-02 | Rice | cytosol | 78.79 | 81.33 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 77.43 | 80.89 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 78.21 | 80.56 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 79.57 | 80.51 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 78.21 | 80.24 |
| CDY58787 | Canola | cytosol | 74.32 | 79.25 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 79.57 | 78.96 |
| CDX71756 | Canola | cytosol | 73.54 | 78.91 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 77.82 | 78.74 |
| CDY48935 | Canola | cytosol, plastid | 72.57 | 78.53 |
| CDY37067 | Canola | cytosol | 77.82 | 78.43 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 79.57 | 78.2 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 79.38 | 78.01 |
| Zm00001d051268_P004 | Maize | extracellular | 78.99 | 77.78 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 78.99 | 77.63 |
| CDY27357 | Canola | cytosol, plastid | 76.26 | 77.01 |
| Zm00001d017384_P008 | Maize | cytosol | 78.6 | 76.95 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 74.9 | 76.54 |
| EER91410 | Sorghum | cytosol | 75.1 | 76.13 |
| EER91411 | Sorghum | cytosol | 74.9 | 75.94 |
| KRH40488 | Soybean | cytosol | 79.38 | 75.7 |
| Os10t0503700-01 | Rice | plasma membrane | 76.46 | 75.43 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 76.26 | 74.67 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 76.07 | 74.48 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 75.88 | 74.14 |
| GSMUA_Achr11P... | Banana | cytosol | 79.96 | 72.74 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 76.26 | 69.5 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 72.18 | 69.09 |
| CDY26130 | Canola | cytosol | 8.37 | 42.57 |
| CDY37498 | Canola | cytosol, mitochondrion | 7.59 | 42.39 |
| CDY67069 | Canola | cytosol | 7.39 | 37.62 |
| CDY22577 | Canola | cytosol | 10.7 | 36.91 |
| CDY32586 | Canola | cytosol | 27.04 | 36.77 |
| CDY02469 | Canola | cytosol | 29.18 | 36.41 |
| CDY08220 | Canola | cytosol | 29.18 | 36.41 |
| CDY10607 | Canola | cytosol | 28.99 | 36.25 |
| CDY24057 | Canola | cytosol | 28.99 | 36.16 |
| CDY39079 | Canola | cytosol | 28.99 | 36.16 |
| CDY24617 | Canola | cytosol | 28.6 | 36.03 |
| CDY22956 | Canola | cytosol | 28.4 | 35.78 |
| CDX82280 | Canola | cytosol | 28.4 | 35.78 |
| CDY42205 | Canola | cytosol | 28.4 | 35.78 |
| CDY33416 | Canola | cytosol | 28.4 | 35.78 |
| CDY51692 | Canola | cytosol | 28.21 | 35.54 |
| CDY33073 | Canola | cytosol | 28.4 | 35.44 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 28.99 | 34.89 |
| CDX97528 | Canola | cytosol | 28.79 | 34.82 |
| CDY55205 | Canola | cytosol | 28.6 | 34.75 |
| CDY58940 | Canola | cytosol | 27.04 | 34.41 |
| CDY03623 | Canola | cytosol | 26.85 | 34.16 |
| CDX82505 | Canola | cytosol | 28.4 | 34.11 |
| CDX75739 | Canola | cytosol | 28.4 | 33.49 |
| CDY72259 | Canola | cytosol | 14.2 | 32.88 |
| CDY51112 | Canola | cytosol | 28.02 | 32.73 |
| CDX85725 | Canola | cytosol | 28.02 | 32.58 |
| CDX70383 | Canola | cytosol | 28.02 | 32.21 |
| CDY51111 | Canola | cytosol | 14.98 | 30.92 |
| CDY71952 | Canola | cytosol | 24.71 | 30.46 |
| CDY11154 | Canola | cytosol | 11.67 | 29.7 |
| CDX85726 | Canola | cytosol | 28.21 | 29.59 |
| CDX69778 | Canola | cytosol | 28.02 | 29.09 |
| CDX78412 | Canola | cytosol | 28.02 | 28.97 |
| CDY56825 | Canola | cytosol | 12.65 | 28.51 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 28.02 | 27.53 |
| CDY54037 | Canola | cytosol | 14.01 | 26.97 |
| CDY53867 | Canola | cytosol | 21.4 | 26.07 |
| CDX67556 | Canola | cytosol | 23.93 | 26.06 |
| CDX76225 | Canola | cytosol | 24.9 | 25.81 |
| CDX95397 | Canola | cytosol | 24.71 | 25.71 |
| CDY13319 | Canola | cytosol | 23.93 | 25.1 |
| CDX72939 | Canola | mitochondrion, nucleus | 21.79 | 24.03 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 13.62 | 23.41 |
| CDY02574 | Canola | plastid | 20.23 | 21.76 |
| CDY47205 | Canola | plastid | 19.65 | 21.13 |
| CDY68148 | Canola | nucleus | 21.98 | 15.29 |
| CDY49860 | Canola | cytosol | 1.56 | 6.4 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078CBU7 | EnsemblPlants:CDX74342 | ProteinID:CDX74342 | ProteinID:CDX74342.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00112145001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF555 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EE4DA2 | SEG:seg | : | : | : | : |
Description
BnaA03g27050D
Coordinates
chrLK031800:+:2299143..2302813
Molecular Weight (calculated)
58312.9 Da
IEP (calculated)
8.637
GRAVY (calculated)
-0.447
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNNNNNRG GGGGRYPPGI GAGRGAINPN PNFQSRPGYQ QQQQPQYVQR GAYSHQQQQF QQATSQPPRQ YQQQQHQQQW LPRPQISTGN SNGGGGGDAV
101: VEVEKTVLSD TNSEDWKARL KLPAPDTRYR TEDVTATKGN EFEDYFLKRE LLMGIYEKGF ERPSPIQEES IPIALTGRDI LARAKNGTGK TAAFCIPVLE
201: KIDQDNNVIQ AVIIVPTREL ALQTSQVCKE LGKHLKIQVM VTTGGTSLKD DIMRLYQPVH LLVGTPGRIL DLTKKGVCVL KDCSVLAMDE ADKLLSQEFQ
301: PSVEHLISFL PQNRQILMFS ATFPVTVKYF KDRFLTNPYI INLMDELTLK GITQFYAFVE ERQKIHCLNT LFSKLQINQS IIFCNSVNRV ELLAKKITEL
401: GYSCFYIHAK MLQDHRNRVF HDFRNGACRN LVCTDLFTRG IDIQAVNVVI NFDFPKNAET YLHRVGRSGR FGHLGLAVNL ITYEDRFNLY RIEQELGTEI
501: KQIPPHIDQA IYCQ
101: VEVEKTVLSD TNSEDWKARL KLPAPDTRYR TEDVTATKGN EFEDYFLKRE LLMGIYEKGF ERPSPIQEES IPIALTGRDI LARAKNGTGK TAAFCIPVLE
201: KIDQDNNVIQ AVIIVPTREL ALQTSQVCKE LGKHLKIQVM VTTGGTSLKD DIMRLYQPVH LLVGTPGRIL DLTKKGVCVL KDCSVLAMDE ADKLLSQEFQ
301: PSVEHLISFL PQNRQILMFS ATFPVTVKYF KDRFLTNPYI INLMDELTLK GITQFYAFVE ERQKIHCLNT LFSKLQINQS IIFCNSVNRV ELLAKKITEL
401: GYSCFYIHAK MLQDHRNRVF HDFRNGACRN LVCTDLFTRG IDIQAVNVVI NFDFPKNAET YLHRVGRSGR FGHLGLAVNL ITYEDRFNLY RIEQELGTEI
501: KQIPPHIDQA IYCQ
001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
Arabidopsis Description
RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.