Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37498 | Canola | cytosol, mitochondrion | 23.49 | 38.04 |
| CDY26130 | Canola | cytosol | 25.5 | 37.62 |
| AT1G51380.1 | Thale cress | cytosol | 80.54 | 30.61 |
| CDY58940 | Canola | cytosol | 82.55 | 30.45 |
| CDY03623 | Canola | cytosol | 81.88 | 30.2 |
| TraesCS2A01G552800.1 | Wheat | cytosol | 63.09 | 25.47 |
| GSMUA_Achr9P23810_001 | Banana | cytosol | 65.77 | 25.26 |
| TraesCS2D01G554300.1 | Wheat | nucleus | 65.1 | 25.0 |
| Solyc11g033280.1.1 | Tomato | cytosol, nucleus, plastid | 64.43 | 24.55 |
| CDY42205 | Canola | cytosol | 67.11 | 24.51 |
| CDY24617 | Canola | cytosol | 67.11 | 24.51 |
| CDX82280 | Canola | cytosol | 67.11 | 24.51 |
| CDY22956 | Canola | cytosol | 67.11 | 24.51 |
| CDY51692 | Canola | cytosol | 67.11 | 24.51 |
| CDY33416 | Canola | cytosol | 67.11 | 24.51 |
| GSMUA_Achr3P27120_001 | Banana | cytosol | 54.36 | 24.32 |
| Os03t0566800-01 | Rice | cytosol, nucleus, plasma membrane | 65.1 | 24.01 |
| Os01t0639100-01 | Rice | nucleus | 65.1 | 24.01 |
| KRH12197 | Soybean | nucleus | 65.1 | 23.89 |
| VIT_06s0080g00550.t01 | Wine grape | cytosol | 66.44 | 23.86 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 65.1 | 23.83 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 65.1 | 23.83 |
| KRH37217 | Soybean | endoplasmic reticulum | 65.1 | 23.83 |
| EES07819 | Sorghum | cytosol | 65.1 | 23.83 |
| HORVU6Hr1G094560.1 | Barley | cytosol | 65.1 | 23.54 |
| PGSC0003DMT400019783 | Potato | cytosol | 64.43 | 23.47 |
| TraesCS2D01G553400.1 | Wheat | cytosol | 63.76 | 23.46 |
| TraesCS6B01G472700.1 | Wheat | nucleus | 64.43 | 23.3 |
| TraesCS6D01G401900.1 | Wheat | nucleus | 64.43 | 23.24 |
| TraesCS6A01G416700.1 | Wheat | nucleus | 64.43 | 23.24 |
| CDY32586 | Canola | cytosol | 57.72 | 22.75 |
| Zm00001d018542_P006 | Maize | cytosol | 64.43 | 21.67 |
| CDY45702 | Canola | cytosol | 29.53 | 21.36 |
| CDY08220 | Canola | cytosol | 57.05 | 20.63 |
| CDY10607 | Canola | cytosol | 56.38 | 20.44 |
| CDY02469 | Canola | cytosol | 56.38 | 20.39 |
| CDY39079 | Canola | cytosol | 56.38 | 20.39 |
| CDY24057 | Canola | cytosol | 55.7 | 20.15 |
| CDY33073 | Canola | cytosol | 55.7 | 20.15 |
| CDY55205 | Canola | cytosol | 57.05 | 20.09 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 57.05 | 19.91 |
| CDX97528 | Canola | cytosol | 56.38 | 19.76 |
| CDX82505 | Canola | cytosol | 56.38 | 19.63 |
| CDY51111 | Canola | cytosol | 32.21 | 19.28 |
| CDX75739 | Canola | cytosol | 56.38 | 19.27 |
| CDY56825 | Canola | cytosol | 28.19 | 18.42 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 26.17 | 13.04 |
| CDY71952 | Canola | cytosol | 33.56 | 11.99 |
| CDY54061 | Canola | cytosol | 26.17 | 11.96 |
| CDY51112 | Canola | cytosol | 33.56 | 11.36 |
| CDX85725 | Canola | cytosol | 33.56 | 11.31 |
| CDX70383 | Canola | cytosol | 33.56 | 11.19 |
| CDY07205 | Canola | cytosol | 36.24 | 11.0 |
| CDX91901 | Canola | cytosol | 36.91 | 10.98 |
| CDY51147 | Canola | cytosol | 36.24 | 10.89 |
| CDX67556 | Canola | cytosol | 34.23 | 10.81 |
| CDY48935 | Canola | cytosol, plastid | 34.23 | 10.74 |
| CDX74342 | Canola | cytosol | 36.91 | 10.7 |
| CDX71756 | Canola | cytosol | 34.23 | 10.65 |
| CDY58787 | Canola | cytosol | 34.23 | 10.58 |
| CDY13319 | Canola | cytosol | 34.23 | 10.41 |
| CDY27357 | Canola | cytosol, plastid | 34.9 | 10.22 |
| CDX85726 | Canola | cytosol | 33.56 | 10.2 |
| CDY37067 | Canola | cytosol | 34.9 | 10.2 |
| CDX95397 | Canola | cytosol | 33.56 | 10.12 |
| CDX69778 | Canola | cytosol | 33.56 | 10.1 |
| CDX76225 | Canola | cytosol | 33.56 | 10.08 |
| CDX78412 | Canola | cytosol | 33.56 | 10.06 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 33.56 | 9.56 |
| CDY53867 | Canola | cytosol | 24.83 | 8.77 |
| CDY54037 | Canola | cytosol | 14.77 | 8.24 |
| CDX72939 | Canola | mitochondrion, nucleus | 24.83 | 7.94 |
| CDY47205 | Canola | plastid | 20.81 | 6.49 |
| CDY02574 | Canola | plastid | 20.81 | 6.49 |
| CDY49860 | Canola | cytosol | 4.7 | 5.6 |
| CDY68148 | Canola | nucleus | 26.17 | 5.28 |
| CDY72259 | Canola | cytosol | 1.34 | 0.9 |
| HORVU3Hr1G015500.1 | Barley | cytosol | 0.67 | 0.65 |
| HORVU3Hr1G015460.1 | Barley | cytosol | 0.67 | 0.65 |
| HORVU3Hr1G050890.1 | Barley | cytosol | 0.67 | 0.62 |
| CDY11154 | Canola | cytosol | 0.67 | 0.5 |
| CDY67069 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY22577 | EnsemblPlantsGene:GSBRNA2T00019193001 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF57 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:CDY22577 | ProteinID:CDY22577.1 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EF147E | UniProt:A0A078GC12 | MapMan:35.1 | : |
Description
BnaC05g24150DBnaC05g24150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC12]
Coordinates
chrLK032133:-:215889..221423
Molecular Weight (calculated)
17499.1 Da
IEP (calculated)
9.154
GRAVY (calculated)
-0.419
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDPVRILVQ RDDLTLELSV YFKLSPTEEE WKFNTLCDLY GRLVINQAII FCNTRQKVDW LTEKMRSSNF IVSSMHGDKR QKERDEIMNQ FRSFKSRVLI
101: ASDEWARGID VQTVSHVINY DIPNNPELYI HRTGRAGHGL ARKVLRLTL
101: ASDEWARGID VQTVSHVINY DIPNNPELYI HRTGRAGHGL ARKVLRLTL
001: MEGTLDEENL VFETTKGIKP IKSFDDMGMN DKVLRGVYDY GYKKPSEIQQ RALVPILKGR DVIAQAQSGT GKTSMIAISV CQIVNISSRK VQVLVLSPSR
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV
Arabidopsis Description
RH34DEAD-box ATP-dependent RNA helicase 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.