Factsheet for GSMUA_Achr9P23810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	90.46	89.77
Os01t0639100-01	Rice	nucleus	92.27	88.61
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	92.27	88.61
TraesCS2A01G552800.1	Wheat	cytosol	83.76	88.08
Zm00001d051840_P003	Maize	extracellular, mitochondrion	91.24	86.98
EES07819	Sorghum	cytosol	90.98	86.73
VIT_06s0080g00550.t01	Wine grape	cytosol	92.53	86.51
GSMUA_Achr3P27120_001	Banana	cytosol	73.71	85.89
PGSC0003DMT400019783	Potato	cytosol	90.21	85.57
KRH12197	Soybean	nucleus	89.43	85.47
KRH37217	Soybean	endoplasmic reticulum	89.43	85.26
TraesCS2D01G554300.1	Wheat	nucleus	84.54	84.54
TraesCS2B01G584200.1	Wheat	mitochondrion	88.4	84.28
TraesCS6B01G472700.1	Wheat	nucleus	88.66	83.5
HORVU6Hr1G094560.1	Barley	cytosol	88.66	83.5
TraesCS6A01G416700.1	Wheat	nucleus	88.66	83.29
TraesCS6D01G401900.1	Wheat	nucleus	88.66	83.29
AT3G19760.1	Thale cress	cytosol	87.11	82.84
Bra022449.1-P	Field mustard	cytosol	86.86	82.6
CDY24617	Canola	cytosol	86.86	82.6
CDY33416	Canola	cytosol	86.86	82.6
Bra032127.1-P	Field mustard	cytosol	86.6	82.35
Bra038231.1-P	Field mustard	cytosol	86.6	82.35
CDY22956	Canola	cytosol	86.6	82.35
CDY42205	Canola	cytosol	86.6	82.35
CDY51692	Canola	cytosol	86.6	82.35
TraesCS2D01G553400.1	Wheat	cytosol	85.82	82.22
CDX82280	Canola	cytosol	86.34	82.11
Zm00001d018542_P006	Maize	cytosol	90.72	79.46
HORVU3Hr1G015500.1	Barley	cytosol	28.35	71.9
HORVU3Hr1G015460.1	Barley	cytosol	28.35	71.9
AT1G51380.1	Thale cress	cytosol	72.42	71.68
Bra014267.1-P	Field mustard	cytosol	73.71	70.79
CDY58940	Canola	cytosol	73.71	70.79
CDY03623	Canola	cytosol	73.45	70.54
HORVU3Hr1G050890.1	Barley	cytosol	28.35	67.9
CDY22577	Canola	cytosol	25.26	65.77
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	63.92	60.05
GSMUA_Achr2P19480_001	Banana	cytosol	55.93	58.65
GSMUA_Achr8P24670_001	Banana	cytosol	56.7	58.51
GSMUA_Achr10P...	Banana	cytosol	57.73	58.49
GSMUA_AchrUn_...	Banana	cytosol	55.41	58.11
GSMUA_Achr7P19690_001	Banana	cytosol	51.55	56.66
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	29.38	49.78
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	55.67	49.43
GSMUA_Achr9P13950_001	Banana	mitochondrion	28.61	36.16
GSMUA_Achr2P10560_001	Banana	cytosol	36.6	29.22
GSMUA_Achr5P12220_001	Banana	cytosol	36.6	28.86
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	36.34	28.66
GSMUA_Achr8P05380_001	Banana	cytosol	34.02	28.51
GSMUA_Achr10P...	Banana	nucleus	35.05	28.22
GSMUA_Achr6P14220_001	Banana	cytosol	35.31	26.2
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	32.47	25.3
GSMUA_Achr11P...	Banana	cytosol	36.34	24.96
GSMUA_Achr6P27990_001	Banana	plastid	23.71	18.97
GSMUA_Achr1P01890_001	Banana	plastid	23.45	17.2

Protein Annotations

MapMan:17.3.1.1.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr9G23810_001
EnsemblPlants:GSMUA_Achr9P23810_001	EnsemblPlants:GSMUA_Achr9T23810_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0U2Y8	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002954BDF	:

Description

DEAD-box ATP-dependent RNA helicase 34 [Source:GMGC_GENE;Acc:GSMUA_Achr9G23810_001]

Coordinates

chr9:-:28658609..28666519

Molecular Weight (calculated)

44097.5 Da

IEP (calculated)

5.556

GRAVY (calculated)

-0.143

Length

388 amino acids

Sequence
(BLAST)

001: MDDENLVFET SPGVEAITSF DQMGIRDDLL RGIYAYGFEK PSAIQQRAVI PIINGRDVIA QAQSGTGKSS MIALSVCQMV DTSMREVQAL ILSPTRELAA
101: QTEKVILAIG EYINVQAHAC IGGKSIGEDI RKLEYGVHVV SGTPGRVCDM IKRRTLRTRA IKILILDEAD EMLSRGFKDQ IYDVYRYLPP ELQVALISAT
201: LPHEILEITN KFMTDPIRIL VKRDELTLEG IKQFFVAVER EEWKFDTLCD LYDTLTITQA VIFCNTKRKV DWLTEKMRSN NFTVSSMHGD MPQKERDAIM
301: AEFRSGATRV LITTDVWARG IDVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVRK DDIRILRDIE QYYSTQIDEM PMNVADLI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.