CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051840_P003	Maize	extracellular, mitochondrion	99.51	99.51
Os01t0639100-01	Rice	nucleus	94.1	94.8
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	93.86	94.55
GSMUA_Achr9P23810_001	Banana	cytosol	86.73	90.98
Zm00001d018542_P006	Maize	cytosol	99.02	90.97
TraesCS2A01G552800.1	Wheat	cytosol	82.06	90.51
TraesCS2B01G584200.1	Wheat	mitochondrion	88.94	88.94
TraesCS2D01G554300.1	Wheat	nucleus	84.77	88.92
TraesCS6D01G401900.1	Wheat	nucleus	90.17	88.86
TraesCS6A01G416700.1	Wheat	nucleus	90.17	88.86
HORVU6Hr1G094560.1	Barley	cytosol	89.93	88.83
TraesCS6B01G472700.1	Wheat	nucleus	89.68	88.59
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	84.77	88.24
TraesCS2D01G553400.1	Wheat	cytosol	86.73	87.16
VIT_06s0080g00550.t01	Wine grape	cytosol	88.7	86.99
KRH37217	Soybean	endoplasmic reticulum	86.98	86.98
KRH12197	Soybean	nucleus	86.73	86.95
PGSC0003DMT400019783	Potato	cytosol	86.24	85.82
CDY33416	Canola	cytosol	85.01	84.8
Bra022449.1-P	Field mustard	cytosol	85.01	84.8
Bra038231.1-P	Field mustard	cytosol	84.77	84.56
CDY22956	Canola	cytosol	84.77	84.56
CDY24617	Canola	cytosol	84.77	84.56
Bra032127.1-P	Field mustard	cytosol	84.77	84.56
CDY51692	Canola	cytosol	84.77	84.56
CDY42205	Canola	cytosol	84.77	84.56
CDX82280	Canola	cytosol	84.52	84.31
AT3G19760.1	Thale cress	cytosol	84.52	84.31
GSMUA_Achr3P27120_001	Banana	cytosol	64.62	78.98
HORVU3Hr1G015460.1	Barley	cytosol	28.26	75.16
HORVU3Hr1G015500.1	Barley	cytosol	28.26	75.16
AT1G51380.1	Thale cress	cytosol	68.8	71.43
HORVU3Hr1G050890.1	Barley	cytosol	28.26	70.99
CDY58940	Canola	cytosol	70.27	70.79
Bra014267.1-P	Field mustard	cytosol	70.27	70.79
CDY03623	Canola	cytosol	70.02	70.54
CDY22577	Canola	cytosol	23.83	65.1
EES04512	Sorghum	cytosol	63.88	63.41
OQU76995	Sorghum	cytosol	63.88	50.29
KXG22711	Sorghum	cytosol	33.66	31.93
KXG32708	Sorghum	cytosol	32.92	31.31
EER91411	Sorghum	cytosol	34.89	28.01
EER91410	Sorghum	cytosol	34.89	28.01
EER95473	Sorghum	cytosol	33.42	27.25
OQU84655	Sorghum	cytosol	42.51	22.61
KXG34209	Sorghum	plastid	21.38	19.64
OQU85369	Sorghum	mitochondrion, plastid	25.06	17.8
KXG29825	Sorghum	cytosol	38.08	17.57

Protein Annotations

MapMan:17.3.1.1.1	Gene3D:3.40.50.300	EntrezGene:8084458	UniProt:C5XWR4	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlants:EES07819
ProteinID:EES07819	ProteinID:EES07819.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0010468	GO:GO:0010501	GO:GO:0016787
GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	EnsemblPlantsGene:SORBI_3004G356900	SUPFAM:SSF52540	unigene:Sbi.3588	UniParc:UPI0001A861BA	RefSeq:XP_002454843.1

Description

hypothetical protein

Coordinates

chr4:-:68390333..68393769

Molecular Weight (calculated)

45996.6 Da

IEP (calculated)

6.026

GRAVY (calculated)

-0.217

Length

407 amino acids

Sequence
(BLAST)

001: MAAPTTSRRG PGGARNMDDE NLTFETSPGV EVVSSFDQMG IKDDLLRGIY GYGFEKPSAI QQRAVLPIIN GRDVIAQAQS GTGKTSMISL TVCQIVDTAV
101: REVQALILSP TRELASQTER VMLAIGDHLN VQVHACIGGK SIGEDIRRLE NGVHVVSGTP GRVCDMIKRR TLRTRAIKLL VLDEADEMLS RGFKDQIYDV
201: YRYLPPELQV CLISATLPHE ILEMTSKFMT EPVRILVKRD ELTLEGIKQF FVAVEKEEWK FDTLCDLYDT LTITQAVIFC NTKRKVDWLT EKMRSNNFTV
301: SAMHGDMPQQ ERDAIMGEFR SGDTRVLITT DVWARGLDVQ QVSLVINYDL PNNRELYIHR IGRSGRFGRK GVAINFVRKD DIRILRDIEQ YYSTQIDEMP
401: MNVADLI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.