Factsheet for VIT_06s0080g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	88.19	93.61
PGSC0003DMT400019783	Potato	cytosol	91.33	92.67
KRH12197	Soybean	nucleus	90.6	92.61
GSMUA_Achr9P23810_001	Banana	cytosol	86.51	92.53
KRH37217	Soybean	endoplasmic reticulum	90.6	92.38
Os01t0639100-01	Rice	nucleus	87.71	90.1
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	87.23	89.6
Zm00001d051840_P003	Maize	extracellular, mitochondrion	87.23	88.94
EES07819	Sorghum	cytosol	86.99	88.7
TraesCS2A01G552800.1	Wheat	cytosol	78.07	87.8
CDY24617	Canola	cytosol	85.78	87.25
CDY33416	Canola	cytosol	85.78	87.25
Bra022449.1-P	Field mustard	cytosol	85.78	87.25
CDY42205	Canola	cytosol	85.54	87.01
CDY51692	Canola	cytosol	85.54	87.01
AT3G19760.1	Thale cress	cytosol	85.54	87.01
Bra032127.1-P	Field mustard	cytosol	85.54	87.01
Bra038231.1-P	Field mustard	cytosol	85.54	87.01
CDY22956	Canola	cytosol	85.3	86.76
CDX82280	Canola	cytosol	85.3	86.76
TraesCS2B01G584200.1	Wheat	mitochondrion	84.34	86.0
TraesCS2D01G554300.1	Wheat	nucleus	80.24	85.82
HORVU6Hr1G094560.1	Barley	cytosol	84.1	84.71
TraesCS6D01G401900.1	Wheat	nucleus	84.1	84.5
TraesCS6A01G416700.1	Wheat	nucleus	83.86	84.26
TraesCS6B01G472700.1	Wheat	nucleus	83.61	84.22
TraesCS2D01G553400.1	Wheat	cytosol	81.69	83.7
GSMUA_Achr3P27120_001	Banana	cytosol	65.3	81.38
Zm00001d018542_P006	Maize	cytosol	86.75	81.26
Bra014267.1-P	Field mustard	cytosol	72.05	74.01
CDY58940	Canola	cytosol	72.05	74.01
AT1G51380.1	Thale cress	cytosol	69.88	73.98
CDY03623	Canola	cytosol	71.81	73.76
HORVU3Hr1G015500.1	Barley	cytosol	26.02	70.59
HORVU3Hr1G015460.1	Barley	cytosol	26.02	70.59
VIT_04s0008g00980.t01	Wine grape	cytosol	13.73	67.86
HORVU3Hr1G050890.1	Barley	cytosol	26.27	67.28
CDY22577	Canola	cytosol	23.86	66.44
VIT_11s0016g01920.t01	Wine grape	cytosol	61.69	61.99
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	61.45	61.74
VIT_09s0002g01760.t01	Wine grape	cytosol	61.45	58.49
VIT_04s0008g00990.t01	Wine grape	cytosol	16.39	55.28
VIT_00s2262g00010.t01	Wine grape	cytosol	18.8	31.97
VIT_09s0002g06660.t01	Wine grape	cytosol	32.53	31.54
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	34.22	29.58
VIT_15s0046g03200.t01	Wine grape	cytosol	34.94	29.53
VIT_04s0008g05330.t01	Wine grape	cytosol	32.29	29.32
VIT_08s0007g04400.t01	Wine grape	cytosol	33.25	26.9
VIT_08s0007g04430.t01	Wine grape	cytosol	19.28	25.72
VIT_05s0020g02870.t01	Wine grape	extracellular	24.82	21.19
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	28.43	21.18

Protein Annotations

EntrezGene:100255368	wikigene:100255368	MapMan:17.3.1.1.1	Gene3D:3.40.50.300	EMBL:AM483425	ProteinID:CAN62124
ProteinID:CAN62124.1	ProteinID:CCB51651	ProteinID:CCB51651.1	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HHF5	EMBL:FN595757
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987
GO:GO:0010468	GO:GO:0010501	GO:GO:0016787	GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100255368	wikigene:LOC100255368	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF57	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGR:TC63213
UniParc:UPI00015CBE05	ArrayExpress:VIT_06s0080g00550	EnsemblPlantsGene:VIT_06s0080g00550	EnsemblPlants:VIT_06s0080g00550.t01	unigene:Vvi.1139	RefSeq:XP_002275011
RefSeq:XP_002275011.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:20551641..20558119

Molecular Weight (calculated)

46749.6 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.161

Length

415 amino acids

Sequence
(BLAST)

001: MAAAATASVV PANRGGRRNG AVDDEKLVFE TTEGVEPIMS FDQMGIKDDL LRGIYAYGFE KPSAIQQRAV LPIIQGRDVI AQAQSGTGKT SMIALTVCQM
101: VDTSNREVQA LILSPTRELA SQTEKVILAI GDFINIQAHA CIGGKSVGED IRKLEYGVHI VSGTPGRVCD MIKRRTLRTR AIKLLVLDES DEMLSRGFKD
201: QIYDVYRYLP PELQVVLISA TLPNEILEIT NKFMTDPVRI LVKRDELTLE GIKQFFVAVE REEWKFDTLC DLYDTLTITQ AVIFCNTKRK VDWLTEKMRS
301: NNFTVSSMHG DMPQKERDAI MAEFRSGTTR VLITTDVWAR GLDVQQASHV SLVINYDLPN NRELYIHRIG RSGRFGRKGV AINFVKTDDI KILRDIEQYY
401: STQIDEMPMN VADLI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.