Factsheet for VIT_04s0008g05330.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g06660.t01	Wine grape	cytosol	89.5	95.56
PGSC0003DMT400053566	Potato	cytosol	88.84	95.08
PGSC0003DMT400052757	Potato	cytosol	87.75	93.69
AT5G11170.1	Thale cress	cytosol	87.53	93.68
Solyc06g066060.2.1	Tomato	nucleus	82.71	92.2
KXG22711	Sorghum	cytosol	86.21	91.84
Bra023311.1-P	Field mustard	cytosol	84.68	90.63
KXG32708	Sorghum	cytosol	84.46	90.19
TraesCS1B01G477500.1	Wheat	cytosol	84.9	90.02
TraesCS1D01G451300.1	Wheat	cytosol	82.71	89.36
CDY51112	Canola	cytosol	86.0	89.32
TraesCS1A01G443400.1	Wheat	cytosol	84.68	89.17
Bra023312.1-P	Field mustard	cytosol	84.9	88.99
CDX85725	Canola	cytosol	86.0	88.91
TraesCS3B01G224400.1	Wheat	cytosol	82.93	88.55
TraesCS3D01G204400.1	Wheat	cytosol	82.71	88.32
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	83.37	88.19
Os01t0549700-01	Rice	cytosol, plastid	83.15	87.96
CDX70383	Canola	cytosol	85.78	87.7
GSMUA_Achr8P05380_001	Banana	cytosol	88.62	87.47
TraesCS3A01G200100.1	Wheat	cytosol	82.93	86.93
Bra008984.1-P	Field mustard	cytosol	79.87	85.68
Solyc08g061000.2.1	Tomato	nucleus	88.62	83.51
AT5G11200.2	Thale cress	cytosol	87.53	82.3
HORVU1Hr1G095100.5	Barley	cytosol	83.81	81.66
Zm00001d009761_P004	Maize	cytosol	86.0	80.37
CDY71952	Canola	cytosol	72.43	79.38
CDX69778	Canola	cytosol	85.56	78.99
CDX85726	Canola	cytosol	84.68	78.98
Bra008983.1-P	Field mustard	cytosol	81.4	78.81
CDX78412	Canola	cytosol	85.56	78.67
CDY51111	Canola	cytosol	41.58	76.31
CDX69777	Canola	cytosol, nucleus, plasma membrane	85.56	74.76
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	78.99	72.49
Bra006091.1-P	Field mustard	cytosol	78.56	68.51
Zm00001d011149_P002	Maize	cytosol	24.51	67.47
Zm00001d011150_P005	Maize	cytosol	63.46	62.63
CDY56825	Canola	cytosol	28.45	57.02
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	28.88	44.15
VIT_04s0008g00990.t01	Wine grape	cytosol	10.94	40.65
VIT_04s0008g00980.t01	Wine grape	cytosol	7.22	39.29
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	31.95	35.35
VIT_11s0016g01920.t01	Wine grape	cytosol	31.95	35.35
VIT_09s0002g01760.t01	Wine grape	cytosol	31.73	33.26
VIT_06s0080g00550.t01	Wine grape	cytosol	29.32	32.29
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	31.95	30.42
VIT_15s0046g03200.t01	Wine grape	cytosol	31.73	29.53
VIT_00s2262g00010.t01	Wine grape	cytosol	15.54	29.1
VIT_08s0007g04400.t01	Wine grape	cytosol	29.32	26.12
VIT_08s0007g04430.t01	Wine grape	cytosol	16.19	23.79
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	24.07	19.75
VIT_05s0020g02870.t01	Wine grape	extracellular	17.94	16.87

Protein Annotations

EntrezGene:100250852	wikigene:100250852	MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	ProteinID:CCB46794
ProteinID:CCB46794.1	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6H316	EMBL:FN595231	GO:GO:0000166	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0006406	GO:GO:0006810	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010468	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100250852
wikigene:LOC100250852	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0002108CD0	ArrayExpress:VIT_04s0008g05330	EnsemblPlantsGene:VIT_04s0008g05330	EnsemblPlants:VIT_04s0008g05330.t01	RefSeq:XP_002285072
RefSeq:XP_002285072.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:4803786..4813895

Molecular Weight (calculated)

51927.4 Da

IEP (calculated)

5.767

GRAVY (calculated)

-0.379

Length

457 amino acids

Sequence
(BLAST)

001: MGETRDNDAY EEELLDYEEE EDKAPDSVTG KVNGEAAKKG YVGIHSSGFR DFLLKPELLR AIVDSGFEHP SEVQHECIPQ AILGMDVICQ AKSGMGKTAV
101: FVLSTLQQIE PVTGQVAALV LCHTRELAYQ ICHEFERFST YLPDIKVAVF YGGVNIKIHK DLLKNECPHI VVGTPGRILA LARDKDLALK NVRHFILDEC
201: DKMLESLDMR RDVQEIFKMT PHDKQVMMFS ATLSKEIRPV CKKFMQDPME IYVDDEAKLT LHGLVQHYIK LSELEKNRKL NDLLDALDFN QVVIFVKSVS
301: RAAELNKLLV ECNFPSICIH SGMPQEERLT RYKGFKEGHK RILVATDLVG RGIDIERVNI VINYDMPDSA DTYLHRVGRA GRFGTKGLAI TFVSSASDSD
401: VLNQVQERFE VDIKELPEQI DTSTYREKKG EEKRRTKEEE GRLCHRNETR VGYTEAS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.