Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008984.1-P | Field mustard | cytosol | 83.84 | 97.42 |
| AT5G11170.1 | Thale cress | cytosol | 83.03 | 96.25 |
| CDY51112 | Canola | cytosol | 84.85 | 95.45 |
| CDX70383 | Canola | cytosol | 85.45 | 94.63 |
| CDX85725 | Canola | cytosol | 84.44 | 94.57 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 98.38 | 93.12 |
| PGSC0003DMT400053566 | Potato | cytosol | 79.39 | 92.04 |
| CDY71952 | Canola | cytosol | 77.37 | 91.85 |
| PGSC0003DMT400052757 | Potato | cytosol | 78.99 | 91.36 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 78.38 | 90.65 |
| Solyc06g066060.2.1 | Tomato | nucleus | 74.75 | 90.24 |
| KRH47464 | Soybean | nucleus | 76.36 | 88.73 |
| KRH44441 | Soybean | cytosol, nucleus | 76.36 | 88.73 |
| KXG22711 | Sorghum | cytosol | 76.77 | 88.58 |
| KXG32708 | Sorghum | cytosol | 76.57 | 88.55 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 76.36 | 88.32 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 76.16 | 88.08 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 76.57 | 87.94 |
| CDX85726 | Canola | cytosol | 86.87 | 87.76 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 76.57 | 87.33 |
| CDX78412 | Canola | cytosol | 87.68 | 87.32 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 74.55 | 87.23 |
| AT5G11200.2 | Thale cress | cytosol | 85.45 | 87.04 |
| Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 75.76 | 86.81 |
| Os01t0549700-01 | Rice | cytosol, plastid | 75.56 | 86.57 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 75.76 | 86.01 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 78.99 | 85.56 |
| GSMUA_Achr8P05380_001 | Banana | cytosol | 79.8 | 85.31 |
| CDY51111 | Canola | cytosol | 41.01 | 81.53 |
| Solyc08g061000.2.1 | Tomato | nucleus | 79.19 | 80.82 |
| HORVU1Hr1G095100.5 | Barley | cytosol | 75.15 | 79.32 |
| Zm00001d009761_P004 | Maize | cytosol | 77.98 | 78.94 |
| GSMUA_Achr3P26010_001 | Banana | endoplasmic reticulum | 71.31 | 70.88 |
| Zm00001d011149_P002 | Maize | cytosol | 21.82 | 65.06 |
| Zm00001d011150_P005 | Maize | cytosol | 58.99 | 63.07 |
| CDY56825 | Canola | cytosol | 28.08 | 60.96 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.47 | 45.48 |
| CDY37498 | Canola | cytosol, mitochondrion | 8.08 | 43.48 |
| CDY26130 | Canola | cytosol | 8.48 | 41.58 |
| CDY67069 | Canola | cytosol | 7.88 | 38.61 |
| CDY45702 | Canola | cytosol | 15.35 | 36.89 |
| CDY33073 | Canola | cytosol | 29.9 | 35.92 |
| CDY24057 | Canola | cytosol | 29.9 | 35.92 |
| CDY39079 | Canola | cytosol | 29.9 | 35.92 |
| CDY08220 | Canola | cytosol | 29.7 | 35.68 |
| CDY54061 | Canola | cytosol | 23.43 | 35.58 |
| CDY32586 | Canola | cytosol | 27.07 | 35.45 |
| CDY02469 | Canola | cytosol | 29.49 | 35.44 |
| CDY10607 | Canola | cytosol | 29.29 | 35.28 |
| CDY72259 | Canola | cytosol | 15.56 | 34.68 |
| CDY55205 | Canola | cytosol | 29.09 | 34.04 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.29 | 33.96 |
| CDX97528 | Canola | cytosol | 29.09 | 33.88 |
| CDY22956 | Canola | cytosol | 27.68 | 33.58 |
| CDX82280 | Canola | cytosol | 27.68 | 33.58 |
| CDY22577 | Canola | cytosol | 10.1 | 33.56 |
| CDX82505 | Canola | cytosol | 28.89 | 33.41 |
| CDY24617 | Canola | cytosol | 27.47 | 33.33 |
| CDY33416 | Canola | cytosol | 27.47 | 33.33 |
| CDY42205 | Canola | cytosol | 27.47 | 33.33 |
| CDY51692 | Canola | cytosol | 27.47 | 33.33 |
| CDX75739 | Canola | cytosol | 29.09 | 33.03 |
| CDY58940 | Canola | cytosol | 26.46 | 32.43 |
| CDY03623 | Canola | cytosol | 26.26 | 32.18 |
| CDY07205 | Canola | cytosol | 29.49 | 29.74 |
| CDY11154 | Canola | cytosol | 12.12 | 29.7 |
| CDY48935 | Canola | cytosol, plastid | 28.48 | 29.68 |
| CDY58787 | Canola | cytosol | 28.89 | 29.67 |
| CDX71756 | Canola | cytosol | 28.48 | 29.44 |
| CDY51147 | Canola | cytosol | 29.49 | 29.44 |
| CDX91901 | Canola | cytosol | 29.29 | 28.94 |
| CDY54037 | Canola | cytosol | 15.15 | 28.09 |
| CDY37067 | Canola | cytosol | 28.89 | 28.04 |
| CDX74342 | Canola | cytosol | 29.09 | 28.02 |
| CDY27357 | Canola | cytosol, plastid | 28.69 | 27.9 |
| CDX67556 | Canola | cytosol | 26.06 | 27.33 |
| CDX95397 | Canola | cytosol | 26.87 | 26.92 |
| CDX76225 | Canola | cytosol | 26.87 | 26.81 |
| CDY53867 | Canola | cytosol | 22.83 | 26.78 |
| CDY13319 | Canola | cytosol | 26.26 | 26.53 |
| CDX72939 | Canola | mitochondrion, nucleus | 22.63 | 24.03 |
| CDY47205 | Canola | plastid | 18.38 | 19.04 |
| CDY02574 | Canola | plastid | 18.38 | 19.04 |
| CDY68148 | Canola | nucleus | 22.83 | 15.29 |
| CDY49860 | Canola | cytosol | 2.22 | 8.8 |
Protein Annotations
| MapMan:16.11.1.3 | Gene3D:3.40.50.300 | GO:A0A078C409 | EnsemblPlants:CDX69778 | ProteinID:CDX69778 | ProteinID:CDX69778.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00135825001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF530 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0004EEBB84 | SEG:seg | : | : | : |
Description
BnaA10g21270D
Coordinates
chrLK031790:+:1811390..1815051
Molecular Weight (calculated)
55715.3 Da
IEP (calculated)
5.489
GRAVY (calculated)
-0.128
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDVRDNEVY EEELLDYEEE DEKLLDSATK VNGDAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EGKFISLLAL FLSLHLDFFV PTTYIIAMLQ
101: HECIPQAILG MDVICQAKSG MGKTAVFVLS TLQQIEPSPG QVSALILCHT RELAYQICNE FVRFSTYLPD TKVSVFYGGV NNKIHKDLLK NECPHIVVGT
201: PGRVLGLARD KDLSLKNVRH FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPVCKKF MQDDSENWEP MKVSLSFGVA LGTILVFEDA
301: KPGGRGSLFR GSVSPMEIYV DDEAKLTLHG LVQHYIKLSE MEKNRKLNDL LDALDFNQVV IFVKSVSRAG ELNKLLIECN FPSICIHSGM SQEERLTHYK
401: SFKEGHKRIL VATDLVGRGI DIERVNIVIN YDMPDSADTY LHRVGRAGRF GTKGLAITFV ASASDSEVLN QVQARFEVDI KELPEQIDTS TYMPS
101: HECIPQAILG MDVICQAKSG MGKTAVFVLS TLQQIEPSPG QVSALILCHT RELAYQICNE FVRFSTYLPD TKVSVFYGGV NNKIHKDLLK NECPHIVVGT
201: PGRVLGLARD KDLSLKNVRH FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPVCKKF MQDDSENWEP MKVSLSFGVA LGTILVFEDA
301: KPGGRGSLFR GSVSPMEIYV DDEAKLTLHG LVQHYIKLSE MEKNRKLNDL LDALDFNQVV IFVKSVSRAG ELNKLLIECN FPSICIHSGM SQEERLTHYK
401: SFKEGHKRIL VATDLVGRGI DIERVNIVIN YDMPDSADTY LHRVGRAGRF GTKGLAITFV ASASDSEVLN QVQARFEVDI KELPEQIDTS TYMPS
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDFLEN ETVSVRLFSF GVENSEWRLC SFGFIVLVWV SMFRAILMFH SKTHIFEEKR
301: WTRISPMEIY VDDEAKLTLH GLVQHYIKLS EMEKNRKLND LLDALDFNQV VIFVKSVSRA AELNKLLVEC NFPSICIHSG MSQEERLTRY KSFKEGHKRI
401: LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VASASDSEVL NQVQERFEVD IKELPEQIDT STYMPS
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDFLEN ETVSVRLFSF GVENSEWRLC SFGFIVLVWV SMFRAILMFH SKTHIFEEKR
301: WTRISPMEIY VDDEAKLTLH GLVQHYIKLS EMEKNRKLND LLDALDFNQV VIFVKSVSRA AELNKLLVEC NFPSICIHSG MSQEERLTRY KSFKEGHKRI
401: LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VASASDSEVL NQVQERFEVD IKELPEQIDT STYMPS
Arabidopsis Description
DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.