CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g00990.t01	Wine grape	cytosol	66.34	54.47
CDY11154	Canola	cytosol	88.12	44.06
CDY72259	Canola	cytosol	88.12	40.09
CDY54037	Canola	cytosol	69.31	26.22
CDY53867	Canola	cytosol	92.08	22.04
CDY10607	Canola	cytosol	89.11	21.9
CDY02469	Canola	cytosol	89.11	21.84
CDY39079	Canola	cytosol	88.12	21.6
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.09	21.55
CDY08220	Canola	cytosol	87.13	21.36
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	87.13	21.31
CDY55205	Canola	cytosol	89.11	21.28
CDX97528	Canola	cytosol	89.11	21.18
CDY24057	Canola	cytosol	86.14	21.12
CDX82505	Canola	cytosol	89.11	21.03
CDY33073	Canola	cytosol	85.15	20.87
KRH52210	Soybean	cytosol, endoplasmic reticulum	85.15	20.82
CDX75739	Canola	cytosol	89.11	20.64
Solyc07g040750.1.1	Tomato	cytosol	83.17	20.34
CDY32586	Canola	cytosol	74.26	19.84
CDX72939	Canola	mitochondrion, nucleus	90.1	19.53
GSMUA_Achr9P13950_001	Banana	mitochondrion	53.47	17.59
TraesCS6B01G217800.1	Wheat	cytosol	56.44	13.54
CDX82280	Canola	cytosol	54.46	13.48
CDY33416	Canola	cytosol	54.46	13.48
CDY22956	Canola	cytosol	54.46	13.48
CDY24617	Canola	cytosol	54.46	13.48
CDY51692	Canola	cytosol	54.46	13.48
CDY42205	Canola	cytosol	53.47	13.24
CDY68148	Canola	nucleus	92.08	12.58
CDY03623	Canola	cytosol	47.52	11.88
CDY58940	Canola	cytosol	47.52	11.88
CDY54061	Canola	cytosol	37.62	11.66
TraesCS6A01G186600.1	Wheat	cytosol	56.44	10.36
CDY71952	Canola	cytosol	38.61	9.35
CDX85725	Canola	cytosol	39.6	9.05
CDX70383	Canola	cytosol	39.6	8.95
CDY51112	Canola	cytosol	38.61	8.86
CDY48935	Canola	cytosol, plastid	39.6	8.42
CDX71756	Canola	cytosol	39.6	8.35
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	52.48	8.28
CDY58787	Canola	cytosol	38.61	8.09
CDX78412	Canola	cytosol	39.6	8.05
CDX85726	Canola	cytosol	38.61	7.96
CDY07205	Canola	cytosol	38.61	7.94
CDX69778	Canola	cytosol	38.61	7.88
CDY27357	Canola	cytosol, plastid	38.61	7.66
CDY51147	Canola	cytosol	37.62	7.66
CDY37067	Canola	cytosol	38.61	7.65
CDX91901	Canola	cytosol	37.62	7.58
CDX69777	Canola	cytosol, nucleus, plasma membrane	38.61	7.46
CDX74342	Canola	cytosol	37.62	7.39
CDY47205	Canola	plastid	33.66	7.11
CDY02574	Canola	plastid	33.66	7.11
CDX67556	Canola	cytosol	31.68	6.78
OQU84655	Sorghum	cytosol	50.49	6.67
CDY13319	Canola	cytosol	31.68	6.53
CDX95397	Canola	cytosol	31.68	6.48
CDX76225	Canola	cytosol	31.68	6.45
Os02t0221300-01	Rice	cytosol	50.49	5.79
KXG29825	Sorghum	cytosol	47.52	5.44
Zm00001d016351_P002	Maize	nucleus	44.55	5.04
CDY45702	Canola	cytosol	9.9	4.85
TraesCS6A01G186800.1	Wheat	cytosol	55.45	4.4
TraesCS6D01G173700.3	Wheat	cytosol	55.45	4.17
TraesCS6B01G217700.1	Wheat	cytosol	54.46	4.12
Zm00001d016350_P001	Maize	vacuole	18.81	3.77
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	8.91	3.01
VIT_04s0008g00980.t01	Wine grape	cytosol	0.99	1.19
CDY56825	Canola	cytosol	0.99	0.44
CDY22577	Canola	cytosol	0.0	0.0
CDY26130	Canola	cytosol	0.0	0.0
CDY37498	Canola	cytosol, mitochondrion	0.0	0.0
CDY49860	Canola	cytosol	0.0	0.0
CDY51111	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY67069	EnsemblPlantsGene:GSBRNA2T00058757001	Gene3D:3.40.50.300	GO:A0A078JJW6	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:Helicase_ATP-bd	InterPro:IPR014001
InterPro:P-loop_NTPase	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	PFAM:PF00270	PFscan:PS51192	ProteinID:CDY67069
ProteinID:CDY67069.1	SUPFAM:SSF52540	UniParc:UPI0004EEC09E	UniProt:A0A078JJW6	MapMan:35.1	:

Description

BnaA05g36280DBnaA05g36280D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JJW6]

Coordinates

chrLK035724:-:8272..9094

Molecular Weight (calculated)

11030.6 Da

IEP (calculated)

10.530

GRAVY (calculated)

-0.053

Length

101 amino acids

Sequence
(BLAST)

001: MPTGLDVIQQ AQSGTGKTAT FCSGVLQHLD YTLVLAPTRK LAQQIEKVMR PLGDYLGVKV HAYVGRTSVR EDQRILQSGV HVVVGTLGRV RQSLRADAIK
101: M

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.