Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008527.1-P | Field mustard | cytosol | 95.09 | 93.94 |
| KRH04755 | Soybean | cytosol | 61.35 | 75.47 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 72.09 | 69.12 |
| CDY45702 | Canola | cytosol | 42.33 | 66.99 |
| CDY07205 | Canola | cytosol | 96.32 | 63.95 |
| CDY51147 | Canola | cytosol | 96.93 | 63.71 |
| CDX91901 | Canola | cytosol | 96.32 | 62.67 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 96.01 | 61.98 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 91.1 | 61.88 |
| CDX74342 | Canola | cytosol | 96.32 | 61.09 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 90.8 | 60.29 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 89.26 | 59.88 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 90.18 | 59.76 |
| Solyc01g094350.2.1 | Tomato | nucleus | 91.1 | 59.64 |
| Solyc10g017530.2.1 | Tomato | nucleus | 89.57 | 59.47 |
| KRH48173 | Soybean | mitochondrion | 90.8 | 59.2 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 90.8 | 58.96 |
| KRH65096 | Soybean | nucleus | 90.18 | 58.92 |
| KRH48170 | Soybean | endoplasmic reticulum | 90.8 | 58.85 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 88.34 | 58.54 |
| Os04t0533000-02 | Rice | cytosol | 89.26 | 58.43 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 88.34 | 57.72 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 88.65 | 57.68 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 88.96 | 57.09 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 88.34 | 56.69 |
| CDY48935 | Canola | cytosol, plastid | 82.21 | 56.42 |
| CDX71756 | Canola | cytosol | 82.82 | 56.37 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 88.96 | 55.98 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 86.2 | 55.86 |
| CDY58787 | Canola | cytosol | 82.52 | 55.81 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 89.26 | 55.64 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 88.96 | 55.45 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 88.96 | 55.45 |
| Zm00001d051268_P004 | Maize | extracellular | 88.65 | 55.36 |
| EER91410 | Sorghum | cytosol | 85.89 | 55.23 |
| EER91411 | Sorghum | cytosol | 85.89 | 55.23 |
| Zm00001d017384_P008 | Maize | cytosol | 88.65 | 55.05 |
| Os10t0503700-01 | Rice | plasma membrane | 86.81 | 54.32 |
| CDY27357 | Canola | cytosol, plastid | 84.36 | 54.03 |
| KRH40488 | Soybean | cytosol | 89.26 | 53.99 |
| CDY37067 | Canola | cytosol | 84.36 | 53.92 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 88.65 | 53.82 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 84.66 | 52.57 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 84.66 | 52.57 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 84.66 | 52.47 |
| GSMUA_Achr11P... | Banana | cytosol | 89.57 | 51.68 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 84.66 | 48.94 |
| CDY26130 | Canola | cytosol | 12.58 | 40.59 |
| CDY37498 | Canola | cytosol, mitochondrion | 11.35 | 40.22 |
| CDY67069 | Canola | cytosol | 11.66 | 37.62 |
| CDY24057 | Canola | cytosol | 39.57 | 31.31 |
| CDY10607 | Canola | cytosol | 38.96 | 30.9 |
| CDY33073 | Canola | cytosol | 38.96 | 30.83 |
| CDY08220 | Canola | cytosol | 38.96 | 30.83 |
| CDY02469 | Canola | cytosol | 38.96 | 30.83 |
| CDY39079 | Canola | cytosol | 38.96 | 30.83 |
| CDY32586 | Canola | cytosol | 35.58 | 30.69 |
| CDY72259 | Canola | cytosol | 20.86 | 30.63 |
| CDX82280 | Canola | cytosol | 37.73 | 30.15 |
| CDY22956 | Canola | cytosol | 37.73 | 30.15 |
| CDY42205 | Canola | cytosol | 37.73 | 30.15 |
| CDY24617 | Canola | cytosol | 37.73 | 30.15 |
| CDY33416 | Canola | cytosol | 37.73 | 30.15 |
| CDX97528 | Canola | cytosol | 39.26 | 30.12 |
| CDY55205 | Canola | cytosol | 38.96 | 30.02 |
| CDY51692 | Canola | cytosol | 37.42 | 29.9 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 38.96 | 29.74 |
| CDX82505 | Canola | cytosol | 38.65 | 29.44 |
| CDX75739 | Canola | cytosol | 38.65 | 28.9 |
| CDY58940 | Canola | cytosol | 34.97 | 28.22 |
| CDY03623 | Canola | cytosol | 34.66 | 27.97 |
| CDY11154 | Canola | cytosol | 17.18 | 27.72 |
| CDY71952 | Canola | cytosol | 34.05 | 26.62 |
| CDY51112 | Canola | cytosol | 35.58 | 26.36 |
| CDX85725 | Canola | cytosol | 35.58 | 26.24 |
| CDY22577 | Canola | cytosol | 11.96 | 26.17 |
| CDX70383 | Canola | cytosol | 35.58 | 25.95 |
| CDY54037 | Canola | cytosol | 19.63 | 23.97 |
| CDX85726 | Canola | cytosol | 35.89 | 23.88 |
| CDX69778 | Canola | cytosol | 35.58 | 23.43 |
| CDX78412 | Canola | cytosol | 35.58 | 23.34 |
| CDY51111 | Canola | cytosol | 17.48 | 22.89 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 35.58 | 22.18 |
| CDY53867 | Canola | cytosol | 28.53 | 22.04 |
| CDY56825 | Canola | cytosol | 15.34 | 21.93 |
| CDX67556 | Canola | cytosol | 31.6 | 21.82 |
| CDX95397 | Canola | cytosol | 32.52 | 21.46 |
| CDX76225 | Canola | cytosol | 32.52 | 21.37 |
| CDY13319 | Canola | cytosol | 31.6 | 21.02 |
| CDX72939 | Canola | mitochondrion, nucleus | 29.45 | 20.6 |
| CDY47205 | Canola | plastid | 27.3 | 18.62 |
| CDY02574 | Canola | plastid | 27.3 | 18.62 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 16.87 | 18.39 |
| CDY68148 | Canola | nucleus | 29.45 | 12.99 |
| CDY49860 | Canola | cytosol | 1.84 | 4.8 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078IVQ2 | UniProt:A0A078IVQ2 | EnsemblPlants:CDY54061 | ProteinID:CDY54061 |
| ProteinID:CDY54061.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00012059001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF555 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EE68BD | : | : | : | : | : |
Description
BnaA02g36470DBnaA02g36470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVQ2]
Coordinates
chrLK033271:+:44545..46107
Molecular Weight (calculated)
37197.5 Da
IEP (calculated)
8.154
GRAVY (calculated)
-0.102
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIYEKGFER PSPIQEESIP IALTGRDILA RAKNGTGKTA SFCIPVLEKI DQDNNLIQAV IIVPTRELAL QTSQVCKELG KHLKIQVMVT TGGTSLKDDI
101: MRLYQPVHLL VGTPGRILDL TKKGVCVLKD CSVFVMDEAD KLLSQEFQPS VEHLISFLPQ NRQILMFLAT FPVTVKDFKD RFLKNPYIIN LMDEPTLKGI
201: TQFCAFVEER QKIHCLNTLF SKMLQDHRNR VFHDFRNGAC RNLVCTYLFT RGIDIQAVNV VINFDFPKNA ETYLHRVGRS GRFGHLGLAV NLITYEDRLN
301: LYRIEQELGT EIKQIQPHID QAIYCQ
101: MRLYQPVHLL VGTPGRILDL TKKGVCVLKD CSVFVMDEAD KLLSQEFQPS VEHLISFLPQ NRQILMFLAT FPVTVKDFKD RFLKNPYIIN LMDEPTLKGI
201: TQFCAFVEER QKIHCLNTLF SKMLQDHRNR VFHDFRNGAC RNLVCTYLFT RGIDIQAVNV VINFDFPKNA ETYLHRVGRS GRFGHLGLAV NLITYEDRLN
301: LYRIEQELGT EIKQIQPHID QAIYCQ
001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
Arabidopsis Description
RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.