Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45810.1 | KRH62823 | AT1G26110.1 | 21798944 |
| AT2G45810.1 | KRH70630 | AT1G26110.1 | 21798944 |
| AT2G45810.1 | KRH70633 | AT1G26110.1 | 21798944 |
| AT2G45810.1 | KRH75529 | AT1G26110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54061 | Canola | cytosol | 75.47 | 61.35 |
| Bra008527.1-P | Field mustard | cytosol | 70.94 | 56.97 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 70.19 | 54.71 |
| CDY45702 | Canola | cytosol | 40.75 | 52.43 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 93.21 | 51.46 |
| KRH48173 | Soybean | mitochondrion | 96.98 | 51.4 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 97.36 | 51.39 |
| KRH65096 | Soybean | nucleus | 96.6 | 51.3 |
| KRH48170 | Soybean | endoplasmic reticulum | 96.23 | 50.7 |
| Os04t0533000-02 | Rice | cytosol | 91.32 | 48.59 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 91.32 | 48.5 |
| CDY07205 | Canola | cytosol | 89.43 | 48.27 |
| Bra003442.1-P | Field mustard | cytosol | 86.79 | 48.22 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 90.94 | 48.1 |
| Bra007587.1-P | Field mustard | cytosol | 85.66 | 47.99 |
| CDY51147 | Canola | cytosol | 89.81 | 47.98 |
| CDY58787 | Canola | cytosol | 86.79 | 47.72 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 91.32 | 47.64 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 91.32 | 47.64 |
| CDX71756 | Canola | cytosol | 86.04 | 47.6 |
| CDY48935 | Canola | cytosol, plastid | 85.28 | 47.58 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 90.57 | 47.52 |
| CDX91901 | Canola | cytosol | 89.43 | 47.31 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 92.08 | 47.1 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 88.68 | 46.72 |
| Bra037351.1-P | Field mustard | cytosol | 89.81 | 46.67 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 92.08 | 46.65 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 92.08 | 46.65 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 92.08 | 46.65 |
| AT3G61240.1 | Thale cress | cytosol | 87.55 | 46.59 |
| CDY27357 | Canola | cytosol, plastid | 89.43 | 46.56 |
| Zm00001d051268_P004 | Maize | extracellular | 91.7 | 46.55 |
| CDY37067 | Canola | cytosol | 89.43 | 46.47 |
| Zm00001d017384_P008 | Maize | cytosol | 91.7 | 46.29 |
| Bra000965.1-P | Field mustard | cytosol | 89.43 | 46.2 |
| EER91410 | Sorghum | cytosol | 88.3 | 46.15 |
| EER91411 | Sorghum | cytosol | 88.3 | 46.15 |
| CDX74342 | Canola | cytosol | 89.43 | 46.11 |
| Bra039312.1-P | Field mustard | cytosol | 89.43 | 45.84 |
| Os10t0503700-01 | Rice | plasma membrane | 89.81 | 45.68 |
| KRH40488 | Soybean | cytosol | 92.45 | 45.45 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 89.43 | 44.89 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 86.79 | 43.81 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 86.79 | 43.81 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 86.79 | 43.73 |
| GSMUA_Achr11P... | Banana | cytosol | 92.83 | 43.54 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 86.79 | 40.78 |
| KRH10048 | Soybean | cytosol, endoplasmic reticulum | 35.09 | 22.52 |
| KRH23270 | Soybean | cytosol | 35.09 | 22.52 |
| KRH47074 | Soybean | nucleus | 35.09 | 22.52 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 34.72 | 22.28 |
| KRH19215 | Soybean | cytosol, endoplasmic reticulum, nucleus | 34.72 | 22.28 |
| KRH37426 | Soybean | cytosol, endoplasmic reticulum | 34.72 | 22.28 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 34.72 | 22.28 |
| KRH12430 | Soybean | cytosol | 34.72 | 22.28 |
| KRH44102 | Soybean | nucleus | 35.09 | 22.09 |
| KRH02682 | Soybean | cytosol, endoplasmic reticulum, nucleus | 34.34 | 22.03 |
| KRH12197 | Soybean | nucleus | 33.21 | 21.67 |
| KRH37217 | Soybean | endoplasmic reticulum | 33.21 | 21.62 |
| KRH61783 | Soybean | cytosol | 32.83 | 20.37 |
| KRH52452 | Soybean | nucleus | 32.83 | 20.37 |
| KRH47464 | Soybean | nucleus | 32.45 | 20.19 |
| KRH44441 | Soybean | cytosol, nucleus | 32.45 | 20.19 |
| KRG99590 | Soybean | endoplasmic reticulum, nucleus | 28.3 | 15.37 |
| KRG93607 | Soybean | nucleus | 28.68 | 15.35 |
| KRH51049 | Soybean | plastid | 22.64 | 12.71 |
| KRH13813 | Soybean | nucleus | 26.42 | 12.46 |
| KRH43643 | Soybean | nucleus | 26.04 | 12.28 |
| KRH02098 | Soybean | cytosol | 10.19 | 11.74 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A0R0FN75 | EMBL:ACUP02010540 | InterPro:DEAD/DEAH_box_helicase_dom | EnsemblPlantsGene:GLYMA_17G184800 |
| GO:GO:0000166 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006417 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010494 | GO:GO:0010501 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0033962 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | EnsemblPlants:KRH04755 | ProteinID:KRH04755 | ProteinID:KRH04755.1 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF352 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI0006ED6A54 | : |
Description
hypothetical protein
Coordinates
chr17:+:23505148..23507851
Molecular Weight (calculated)
30113.1 Da
IEP (calculated)
8.411
GRAVY (calculated)
-0.003
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIYEKGFER PSPIQEESIP IALTGSDILA RAKNETGKTA AFCIPALEKI DQDNNVIQVV ILVPTRELAL QTSQVCKELG KHLKIQVMVT TSGTSLKDDI
101: MCLYQPVHLL VGTAGRILDL AKKGVCILKD CAMLVMDETD KLLSPEFQPS IEQLIHFIPT TRQILMFSAT FPVTVKDFKD RYLRKPYVFV EERQKVHCLN
201: TLFSKLQINQ SIIFCNSVNR VEFLAKKITE LGYSCFYIHA KMLQDHRNRV FHDFRNGACR NLVCT
101: MCLYQPVHLL VGTAGRILDL AKKGVCILKD CAMLVMDETD KLLSPEFQPS IEQLIHFIPT TRQILMFSAT FPVTVKDFKD RYLRKPYVFV EERQKVHCLN
201: TLFSKLQINQ SIIFCNSVNR VEFLAKKITE LGYSCFYIHA KMLQDHRNRV FHDFRNGACR NLVCT
001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
Arabidopsis Description
RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.