Factsheet for TraesCS2A01G370200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G006100.1
TraesCS3D01G004500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	TraesCS3A01G006100.1	AT1G26110.1	21798944
AT2G45810.1	TraesCS3D01G004500.1	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G387200.1	Wheat	cytosol	97.01	97.39
TraesCS2D01G366700.1	Wheat	cytosol	96.81	95.47
KRH04755	Soybean	cytosol	48.1	90.94
Os04t0533000-02	Rice	cytosol	89.62	90.16
CDY54061	Canola	cytosol	57.68	88.65
CDY45702	Canola	cytosol	35.13	85.44
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	81.64	85.21
Bra008527.1-P	Field mustard	cytosol	55.89	84.85
TraesCS6A01G236800.1	Wheat	cytosol	88.42	84.7
Solyc10g017530.2.1	Tomato	nucleus	80.64	82.28
KRH48173	Soybean	mitochondrion	81.24	81.4
KRH48170	Soybean	endoplasmic reticulum	81.64	81.31
KRH65098	Soybean	endoplasmic reticulum, nucleus	81.24	81.08
KRH65096	Soybean	nucleus	80.64	80.96
CDY07205	Canola	cytosol	79.04	80.65
Solyc01g094350.2.1	Tomato	nucleus	79.64	80.12
CDY51147	Canola	cytosol	79.24	80.04
AT4G00660.1	Thale cress	cytosol, mitochondrion	80.64	80.0
CDX91901	Canola	cytosol	79.64	79.64
TraesCS1A01G174600.1	Wheat	cytosol	83.43	79.62
Bra037351.1-P	Field mustard	cytosol	79.84	78.43
Bra000965.1-P	Field mustard	cytosol	80.24	78.36
CDX74342	Canola	cytosol	80.24	78.21
Bra007587.1-P	Field mustard	cytosol	73.65	78.01
Bra003442.1-P	Field mustard	cytosol	74.05	77.78
CDY58787	Canola	cytosol	74.25	77.18
CDY48935	Canola	cytosol, plastid	72.85	76.84
CDX71756	Canola	cytosol	73.25	76.62
AT3G61240.1	Thale cress	cytosol	75.45	75.9
CDY37067	Canola	cytosol	75.85	74.51
CDY27357	Canola	cytosol, plastid	75.05	73.87
Bra039312.1-P	Field mustard	cytosol	75.85	73.5
GSMUA_Achr11P...	Banana	cytosol	81.64	72.39
AT2G45810.1	Thale cress	cytosol, plastid	76.05	72.16
Solyc05g048850.2.1	Tomato	mitochondrion	72.85	67.97
TraesCS7A01G419400.1	Wheat	cytosol	30.74	37.2
TraesCS2A01G552800.1	Wheat	cytosol	27.15	36.86
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	31.14	35.29
TraesCS6A01G416700.1	Wheat	nucleus	28.54	34.62
TraesCS1A01G443400.1	Wheat	cytosol	29.34	33.87
TraesCS3A01G200100.1	Wheat	cytosol	28.94	33.26
TraesCS4A01G340500.1	Wheat	cytosol	24.15	25.31
TraesCS4A01G031800.1	Wheat	cytosol	24.15	23.82
TraesCS6A01G186600.1	Wheat	cytosol	24.35	22.18
TraesCS6A01G234000.1	Wheat	mitochondrion	20.96	17.47
TraesCS6A01G186800.1	Wheat	cytosol	25.55	10.05

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF352	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2A01G370200	EnsemblPlants:TraesCS2A01G370200.2	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:612846106..612851884

Molecular Weight (calculated)

56918.4 Da

IEP (calculated)

8.648

GRAVY (calculated)

-0.471

Length

501 amino acids

Sequence
(BLAST)

001: MDQRARYPPG IGNGRGGNPN YHGRGPPPTQ QHQHQQQQQA QGHQQQHMER QSQRSQHHNQ QLQHQQWLRR NQTASEAAAG AAKASEHHAP AAADDADLSP
101: QDWKAQLKLP PPDTRYQTED VTATKGNEFE DYFLKRELLM GIYEKGFERP SPIQEESIPI ALTGSDILAR AKNGTGKTAA FCIPALEKID QDKNAIQVVI
201: LVPTRELALQ TSQVCKELGK HLKIQVMVTT GGTSLKDDIV RLYQPVHLLV GTPGRVLDLT KKGICILKDC SMLIMDEADK LLSPEFQPSV EHLIRYLPSS
301: RQILMFSATF PVTVKAFKDK YLPKPYVINL MDELTLKGIT QFYAFVEERQ KVHCLNTLFS KLQINQSIIF CNSVNRVELL AKKITELGYS CFYIHAKMLQ
401: DHRNRVFHDF RNGACRNLVC TDLFTRGIDI QAVNVVINFD FPKTAETYLH RVGRSGRFGH LGLAVNLITY EDRFNLYRIE QELGTEIKPI PPQIDRTIYC
501: Q

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.