Factsheet for TraesCS3A01G006100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G488000.1
TraesCS2B01G515600.1
TraesCS2D01G488300.1
TraesCS5A01G196000.2
TraesCS5B01G187400.1
TraesCS5D01G195000.1
TraesCS6A01G166700.1
TraesCS6A01G166800.1
TraesCS6A01G166900.1
TraesCS6A01G173700.1
TraesCS6B01G194200.1
TraesCS6B01G194300.1
TraesCS6B01G201600.1
TraesCS6D01G155200.1
TraesCS6D01G155300.1
TraesCS6D01G155400.1
TraesCS6D01G162800.1
TraesCS7A01G402300.1
TraesCS7B01G302400.1
TraesCS7D01G396100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	TraesCS5A01G196000.2	AT4G29510.1	21798944
AT1G26110.1	TraesCS5B01G187400.1	AT4G29510.1	21798944
AT1G26110.1	TraesCS5D01G195000.1	AT4G29510.1	21798944
AT1G26110.1	TraesCS6A01G173700.1	AT4G34230.1	21798944
AT1G26110.1	TraesCS6B01G201600.1	AT4G34230.1	21798944
AT1G26110.1	TraesCS6D01G162800.1	AT4G34230.1	21798944
AT1G26110.1	TraesCS2A01G488000.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS2B01G515600.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS2D01G488300.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6A01G166700.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6A01G166800.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6A01G166900.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6B01G194200.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6B01G194300.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6D01G155200.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6D01G155300.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6D01G155400.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS7A01G402300.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS7B01G302400.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS7D01G396100.2	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G004500.1	Wheat	plastid	90.65	90.51
HORVU3Hr1G000880.1	Barley	nucleus	80.39	80.76
Zm00001d051566_P001	Maize	nucleus	9.8	72.22
Os01t0111200-01	Rice	nucleus	62.59	66.94
VIT_02s0087g00680.t01	Wine grape	cytosol	8.45	66.67
EES02617	Sorghum	nucleus, plastid	62.29	62.39
Zm00001d008439_P001	Maize	plasma membrane	59.73	61.02
Zm00001d040142_P001	Maize	nucleus, plastid	58.82	60.28
KRG93865	Soybean	cytosol	4.37	55.77
GSMUA_Achr1P20740_001	Banana	nucleus	46.91	52.8
GSMUA_Achr2P07060_001	Banana	nucleus	44.19	49.41
Solyc08g075300.2.1	Tomato	nucleus, plastid	23.08	48.27
VIT_01s0011g02820.t01	Wine grape	nucleus	44.19	47.56
GSMUA_Achr9P00760_001	Banana	nucleus	42.53	46.92
Zm00001d027310_P001	Maize	nucleus, plastid	21.72	46.15
PGSC0003DMT400002103	Potato	nucleus	41.63	46.15
KRH75529	Soybean	nucleus	42.38	45.99
KRH70630	Soybean	nucleus	42.38	45.32
Solyc05g009980.2.1	Tomato	nucleus	40.87	45.24
KRH70633	Soybean	nucleus	41.78	44.97
Bra011009.1-P	Field mustard	nucleus	40.27	44.72
CDY36091	Canola	nucleus	39.97	44.39
KRH62823	Soybean	nucleus	41.33	44.19
AT1G26110.1	Thale cress	nucleus	40.72	44.19
CDY55955	Canola	nucleus	39.67	44.13
CDY20530	Canola	nucleus	39.97	44.02
CDY51127	Canola	nucleus	38.01	43.08
CDY70855	Canola	plastid	12.67	33.73
KRH76455	Soybean	nucleus	27.3	32.09
Solyc03g119850.1.1	Tomato	mitochondrion	19.76	30.18
Bra027601.1-P	Field mustard	nucleus, plastid	25.19	30.14
VIT_02s0087g00650.t01	Wine grape	cytosol	23.23	30.08
CDY68331	Canola	nucleus, plastid	23.38	29.64
CDX87795	Canola	nucleus	22.93	29.57
AT5G45330.1	Thale cress	nucleus, plastid	25.34	29.42
Bra021964.1-P	Field mustard	nucleus, plastid	23.23	28.84
KRH39773	Soybean	endoplasmic reticulum	24.59	27.67
PGSC0003DMT400010431	Potato	nucleus	28.21	27.1
Solyc06g069280.2.1	Tomato	nucleus	27.15	25.9
CDY13062	Canola	nucleus, plastid	15.69	24.88

Protein Annotations

EnsemblPlants:TraesCS3A01G006100.1	EnsemblPlantsGene:TraesCS3A01G006100	Gene3D:2.30.30.100	InterPro:DFDF	InterPro:FDF_dom	InterPro:IPR025762
InterPro:IPR025768	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N	InterPro:TFG_box	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10
PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51536	SEG:seg	SMART:SM01199
SMART:SM01271	SUPFAM:SSF50182	TIGR:cd01736	MapMan:16.8.2.2.3	:	:

Description

No Description!

Coordinates

chr3A:+:7254336..7259923

Molecular Weight (calculated)

69447.2 Da

IEP (calculated)

7.959

GRAVY (calculated)

-0.726

Length

663 amino acids

Sequence
(BLAST)

001: MAAEAPPPQP PSSSSSSSAA APARQAPAAG AASPETYLGS LISLTSKSEI RYEGVLYNIN TEESSIGLRN VRSFGTEGRK KDGIQIPASD KVYEYILFRG
101: SDIKDLQVKS SPPPPQPQPA PLHNDPAIIQ SHYPQPASTA SSLQSAAGAA LPHLSSQPAQ YGFQRPNFPS NIPLYQPGNN PWGSSGQAPA GNASALSVPP
201: MYWQGYYTPA GGLPSHLQQP TMLQPTPGLS APQTFQYPGL NPSLPSGPPL LQPSATAQGP SSSATPATTA PSASLLGPET SKPLLPNMVP LFTPPVPSHG
301: ASLPVASQPI SMTETSATAS QSLNSLVSSK TPAVNPGSTL SHQTASQAIS SSVASSSLAG LEIPAPLLAS SGQLLQNAPS MLSSSQSMQT PLQMSNNIAK
401: PADTKTKVAE PLLPDPPARA ENNEPILPLP KQTPQRHNGA GSQGHHNYRG RGRGRGSALS QASTKFTEEF DFMAMNEKFN KDEVWGHLGR KSQSRDKDGE
501: QGDDVFDEDL EYEETDNPEL DVKPVYVKDD FFDSLSGGTF GRGGQNGRPR FSELRKMDTE TFGDFARHRQ PYRGGGRGGY RGGGGRSRGS YYGGRGDYGN
601: MGRGGGQENY YGGGRGGHGN MGRGGGGQDN YYDGGSGRGG YVRGGGQEDS YPQRGGGGSY GRG

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.