Factsheet for Zm00001d040142_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001933_P001
Zm00001d015618_P001
Zm00001d020188_P001
Zm00001d032312_P001
Zm00001d036796_P004
Zm00001d046740_P001
Zm00001d053682_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	Zm00001d020188_P001	AT4G29510.1	21798944
AT1G26110.1	Zm00001d015618_P001	AT4G34230.1	21798944
AT1G26110.1	Zm00001d001933_P001	AT5G06770.1	21798944
AT1G26110.1	Zm00001d032312_P001	AT5G06770.1	21798944
AT1G26110.1	Zm00001d036796_P004	AT5G06770.1	21798944
AT1G26110.1	Zm00001d046740_P001	AT5G06770.1	21798944
AT1G26110.1	Zm00001d053682_P001	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008439_P001	Maize	plasma membrane	83.62	83.36
Zm00001d051566_P001	Maize	nucleus	10.97	78.89
Os01t0111200-01	Rice	nucleus	69.24	72.26
VIT_02s0087g00680.t01	Wine grape	cytosol	8.19	63.1
HORVU3Hr1G000880.1	Barley	nucleus	63.37	62.12
KRG93865	Soybean	cytosol	4.79	59.62
TraesCS3A01G006100.1	Wheat	nucleus	60.28	58.82
TraesCS3D01G004500.1	Wheat	plastid	59.04	57.53
Zm00001d027310_P001	Maize	nucleus, plastid	26.12	54.17
Solyc08g075300.2.1	Tomato	nucleus, plastid	24.88	50.79
GSMUA_Achr1P20740_001	Banana	nucleus	45.13	49.58
GSMUA_Achr2P07060_001	Banana	nucleus	44.2	48.23
VIT_01s0011g02820.t01	Wine grape	nucleus	44.82	47.08
GSMUA_Achr9P00760_001	Banana	nucleus	42.81	46.09
KRH75529	Soybean	nucleus	43.43	45.99
Bra011009.1-P	Field mustard	nucleus	42.19	45.73
KRH62823	Soybean	nucleus	43.74	45.65
AT1G26110.1	Thale cress	nucleus	42.97	45.5
KRH70630	Soybean	nucleus	43.59	45.48
KRH70633	Soybean	nucleus	43.28	45.45
CDY55955	Canola	nucleus	41.73	45.3
CDY36091	Canola	nucleus	41.58	45.06
CDY20530	Canola	nucleus	41.27	44.35
PGSC0003DMT400002103	Potato	nucleus	40.65	43.98
CDY51127	Canola	nucleus	39.57	43.76
Solyc05g009980.2.1	Tomato	nucleus	39.57	42.74
Zm00001d037446_P005	Maize	nucleus	40.96	38.35
KRH76455	Soybean	nucleus	27.82	31.91
Solyc03g119850.1.1	Tomato	mitochondrion	21.02	31.34
CDY70855	Canola	plastid	11.28	29.32
VIT_02s0087g00650.t01	Wine grape	cytosol	23.18	29.3
Bra027601.1-P	Field mustard	nucleus, plastid	24.57	28.7
CDX87795	Canola	nucleus	22.72	28.6
CDY68331	Canola	nucleus, plastid	22.87	28.3
AT5G45330.1	Thale cress	nucleus, plastid	24.88	28.2
KRH39773	Soybean	endoplasmic reticulum	25.35	27.84
Bra021964.1-P	Field mustard	nucleus, plastid	22.87	27.72
PGSC0003DMT400010431	Potato	nucleus	28.9	27.1
Solyc06g069280.2.1	Tomato	nucleus	28.13	26.19
CDY13062	Canola	nucleus, plastid	15.77	24.4

Protein Annotations

EntrezGene:100192851	MapMan:16.8.2.2.3	Gene3D:2.30.30.100	UniProt:A0A1D6MNC6	InterPro:DFDF	InterPro:FDF_dom
InterPro:FFD_box	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N
ProteinID:ONM30624.1	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51513	PFscan:PS51536
PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182	InterPro:TFG_box
UniParc:UPI00022183FA	EnsemblPlantsGene:Zm00001d040142	EnsemblPlants:Zm00001d040142_P001	EnsemblPlants:Zm00001d040142_T001	SEG:seg	:

Description

Protein decapping 5

Coordinates

chr3:+:29090120..29096389

Molecular Weight (calculated)

67978.8 Da

IEP (calculated)

7.948

GRAVY (calculated)

-0.605

Length

647 amino acids

Sequence
(BLAST)

001: MAAEAPPSAS ASSSSAPRPP AAAASASGGG AAGSAESYIG SLISLTSKSE IRYEGVLYKI NTEESSIGLR NVRSFGTEGR KKDGMQIPAS DKVYEYILFR
101: GTDIKDLQVK SSPPPPPPQA ASLHNDPAII QSHYSQPAST SSNLPSAGGA VLPDLSSQAV QYGLQRPTFQ SNLPLYQPGN APRGSSAAPP AGNAPWGSSA
201: EPPAGTTLSV PSMYWHGYYA PSSGLPPHLQ QPLLLQPTPG LSVPQNLQYP GLNPSLPSGM QKLSELQPSL MPPINSQGSS GILPTTTAPA SATLLAPESS
301: KPQVPNMGSL FTPATSLGAT FPYPSQPTPV AETSATVSQN ITSFSSNKAT ALPGSTLSYQ TASQSVSSTI APSSSAQVEM AVPLLASSGQ LLQNTSSMLS
401: SSHSMQAPLQ VASKEVKPVE PKAKVAEPLL PDPLLPDPPS QSLPENKEPI LPLPKQTPQK YNGSGLHNHH NFRGRGRGRG SAFSQSVTTF TEEFDFTAMN
501: EKFNKDEVWG HLGKKSQSRD KDGEVGDDVF DEDLEVEETD NPELSVKPVY VKDDFFDSLS SGTFGRGGPN GRGRPSERRR VDTETFGEFP RHRQPYRGGA
601: RGYRGGGRSR GSYYGGRGYG NTGTGGYGNT GTGGPGNSYS HRGYGRD

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.