Factsheet for VIT_01s0011g02820.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0180g00250.t01
VIT_03s0180g00260.t01
VIT_08s0007g06400.t01
VIT_11s0016g02530.t01
VIT_11s0016g04280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	VIT_11s0016g02530.t01	AT4G29510.1	21798944
AT1G26110.1	VIT_03s0180g00250.t01	AT4G34230.1	21798944
AT1G26110.1	VIT_03s0180g00260.t01	AT4G34230.1	21798944
AT1G26110.1	VIT_08s0007g06400.t01	AT5G06770.1	21798944
AT1G26110.1	VIT_11s0016g04280.t01	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0087g00680.t01	Wine grape	cytosol	9.74	71.43
KRG93865	Soybean	cytosol	5.84	69.23
KRH70630	Soybean	nucleus	65.42	65.0
Zm00001d051566_P001	Maize	nucleus	9.42	64.44
KRH70633	Soybean	nucleus	63.8	63.8
KRH75529	Soybean	nucleus	62.5	63.01
KRH62823	Soybean	nucleus	63.31	62.9
PGSC0003DMT400002103	Potato	nucleus	60.71	62.54
Solyc05g009980.2.1	Tomato	nucleus	59.25	60.93
GSMUA_Achr1P20740_001	Banana	nucleus	57.63	60.27
AT1G26110.1	Thale cress	nucleus	59.25	59.74
CDY36091	Canola	nucleus	56.49	58.29
Bra011009.1-P	Field mustard	nucleus	56.33	58.12
CDY55955	Canola	nucleus	56.17	58.05
CDY20530	Canola	nucleus	56.33	57.64
GSMUA_Achr2P07060_001	Banana	nucleus	55.19	57.34
CDY51127	Canola	nucleus	53.57	56.41
GSMUA_Achr9P00760_001	Banana	nucleus	53.08	54.41
Os01t0111200-01	Rice	nucleus	49.68	49.35
HORVU3Hr1G000880.1	Barley	nucleus	48.54	45.3
Zm00001d008439_P001	Maize	plasma membrane	47.56	45.15
EES02617	Sorghum	nucleus, plastid	48.38	45.02
Zm00001d040142_P001	Maize	nucleus, plastid	47.08	44.82
TraesCS3A01G006100.1	Wheat	nucleus	47.56	44.19
TraesCS3D01G004500.1	Wheat	plastid	46.75	43.37
Zm00001d027310_P001	Maize	nucleus, plastid	18.51	36.54
VIT_02s0087g00650.t01	Wine grape	cytosol	26.79	32.23

Protein Annotations

EntrezGene:100242198	wikigene:100242198	Gene3D:2.30.30.100	MapMan:35.1	ProteinID:CCB50955	ProteinID:CCB50955.1
InterPro:DFDF	UniProt:F6HF25	InterPro:FDF_dom	InterPro:FFD_box	EMBL:FN595752	GO:GO:0000932
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0010606	GO:GO:0016043	GO:GO:0017148	GO:GO:0019538	GO:GO:0031087	GO:GO:0033962
GO:GO:0042803	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768	EntrezGene:LOC100242198	wikigene:LOC100242198
InterPro:LSM_dom_sf	InterPro:Lsm14-like_N	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51513
PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182
TIGR:TC68604	InterPro:TFG_box	UniParc:UPI000198286F	ArrayExpress:VIT_01s0011g02820	EnsemblPlantsGene:VIT_01s0011g02820	EnsemblPlants:VIT_01s0011g02820.t01
unigene:Vvi.14011	RefSeq:XP_002281060	RefSeq:XP_002281060.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:2508191..2516979

Molecular Weight (calculated)

65260.5 Da

IEP (calculated)

7.853

GRAVY (calculated)

-0.547

Length

616 amino acids

Sequence
(BLAST)

001: MAVEASRSSS SADSYIGSLI SLTSKSEIRY EGVLYNINTE ESSIGLRNVR SFGTEGRKKD GPQVPPSDKV YEYILFRGSD IKDLQVKSSP PVQATPPINN
101: DPAIIQSHYP RPATTSASLP STVSGPLPDL SSHNAQLGLP GSTFQGGLPL YQPGGNLGSW GPAPPPPTAN GSGLTMPMYW QGYYGPPNGL PHLHQQSLLR
201: PPPVLSMPPM QYPGFNASLQ PGAPNLPGSN LPEYSSPLLP TSSGSLNLTS TSLSPSTLPS NLPSSMPSIL PSSMPSILPS TLPSALPPVP SAALASETLS
301: SLMPNKVPNP TLPSVTLGIS LPLVTPLNTS SSEINAIAPP ISNKPNAVSG PTLPYQTISQ SIPSVGTSSP NHPEIAAPSL VTPGQLLQSG PTTISSSPSS
401: QTAHKDVEVV QVSSSASQES SVPVSAEAQP PILPLPVPSR TVQKLNGAPF QGRHGYRGRG RGTGGSRPVT KFTEDFDFMA MNEKFKKDEV WGHLGKGNKS
501: QSRDKEVDGK VSDEDDYEDE DDAELPKFEV KPIYNKDDFF DSLSCNALDH DSHNGRTRFS EQMKIDTETF GDFPRHRGGR GGRGPNRGGR GRGPYYGRGY
601: GYVGRGRGRA MPSRGP

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.