CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98789
EES04688
EES11610
KXG20371
KXG29649

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	EER98789	AT4G29510.1	21798944
AT1G26110.1	KXG29649	AT4G34230.1	21798944
AT1G26110.1	EES04688	AT5G06770.1	21798944
AT1G26110.1	EES11610	AT5G06770.1	21798944
AT1G26110.1	KXG20371	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008439_P001	Maize	plasma membrane	88.67	90.45
Zm00001d051566_P001	Maize	nucleus	11.03	81.11
Os01t0111200-01	Rice	nucleus	70.09	74.84
HORVU3Hr1G000880.1	Barley	nucleus	66.31	66.52
VIT_02s0087g00680.t01	Wine grape	cytosol	8.16	64.29
KRG93865	Soybean	cytosol	4.98	63.46
TraesCS3A01G006100.1	Wheat	nucleus	62.39	62.29
TraesCS3D01G004500.1	Wheat	plastid	61.78	61.6
Zm00001d027310_P001	Maize	nucleus, plastid	25.98	55.13
GSMUA_Achr1P20740_001	Banana	nucleus	47.28	53.14
GSMUA_Achr2P07060_001	Banana	nucleus	45.47	50.76
Solyc08g075300.2.1	Tomato	nucleus, plastid	23.87	49.84
GSMUA_Achr9P00760_001	Banana	nucleus	44.56	49.08
VIT_01s0011g02820.t01	Wine grape	nucleus	45.02	48.38
KRH75529	Soybean	nucleus	43.2	46.81
KRH70630	Soybean	nucleus	43.81	46.77
KRH70633	Soybean	nucleus	43.35	46.59
Bra011009.1-P	Field mustard	nucleus	41.99	46.57
AT1G26110.1	Thale cress	nucleus	42.75	46.32
CDY36091	Canola	nucleus	41.54	46.06
CDY55955	Canola	nucleus	41.39	45.97
KRH62823	Soybean	nucleus	43.05	45.97
PGSC0003DMT400002103	Potato	nucleus	41.24	45.65
CDY20530	Canola	nucleus	41.09	45.18
CDY51127	Canola	nucleus	39.58	44.79
Solyc05g009980.2.1	Tomato	nucleus	40.33	44.57
OQU76369	Sorghum	nucleus	40.63	41.84
KRH76455	Soybean	nucleus	28.1	32.98
Solyc03g119850.1.1	Tomato	mitochondrion	21.3	32.49
CDY70855	Canola	plastid	11.48	30.52
VIT_02s0087g00650.t01	Wine grape	cytosol	23.57	30.47
CDX87795	Canola	nucleus	22.81	29.38
Bra027601.1-P	Field mustard	nucleus, plastid	24.47	29.24
CDY68331	Canola	nucleus, plastid	22.96	29.06
AT5G45330.1	Thale cress	nucleus, plastid	24.77	28.72
KRH39773	Soybean	endoplasmic reticulum	25.53	28.69
Bra021964.1-P	Field mustard	nucleus, plastid	23.11	28.65
PGSC0003DMT400010431	Potato	nucleus	28.1	26.96
Solyc06g069280.2.1	Tomato	nucleus	27.34	26.04
CDY13062	Canola	nucleus, plastid	15.41	24.4

Protein Annotations

Gene3D:2.30.30.100	MapMan:35.1	EntrezGene:8070453	UniProt:C5XEW0	InterPro:DFDF	EnsemblPlants:EES02617
ProteinID:EES02617	ProteinID:EES02617.1	InterPro:FDF_dom	InterPro:FFD_box	InterPro:IPR025761	InterPro:IPR025762
InterPro:IPR025768	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512
PFscan:PS51513	PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199	SMART:SM01271
EnsemblPlantsGene:SORBI_3003G099300	SUPFAM:SSF50182	InterPro:TFG_box	UniParc:UPI0001A84CC6	RefSeq:XP_002457497.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:8743583..8749825

Molecular Weight (calculated)

69036.1 Da

IEP (calculated)

7.949

GRAVY (calculated)

-0.560

Length

662 amino acids

Sequence
(BLAST)

001: MAAEAPPSAS SSSSSAPRPP AAAAAGSGGG GAAGSAESYI GSLISLTSKS EIRYEGVLYN INTEESSIGL RNVRSFGTEG RKKDGMQIPA SDKVYEYILF
101: RGTDIKDLQV KSSPPPPPPP QAASLHNDPA IIQSHYSQPA STSSSLPSAG GAVLPDLSSQ AVQYGLQRPA FQSNLPLYQP GNAAPWGSSV APPAGNAPWG
201: SSVAPPAGNA STLSVPSMYW QGYYAPSSGL PPHLQQPPLL QPTPGLSVPQ NLQYPGLNPS LPSGPQKLSE LQPSLMPPIT SQGPSTGVLP ATTAPASATL
301: LAPESSKPLL PNMGSLFTPP ATSLGATFPF PSQPTSVAET SATVSHNLTS FGSNKATALP GSTLAYQTVS QSVSSTIAPS SSAQVEMPVP LLAPSGQLLQ
401: NTSSVLSSSH SMQAPLQVAS KEVKPVEPKA KVAEPLLPDP LLPDPPSRAL PENKEPILPL PKQTPQKYNG SGSHNHHNFR GRGRGRGSAF SQSVTAFTEE
501: FDFTAMNEKF NKDEVWGHLG KKSQSRDKDG EVGDDVFDED LEVEETDNPE LAVKPVYVKD DFFDSLSSGT FGRGGPNGRG RPSERRRVDT ETFGEFPRHR
601: QPYRGGARGY RGGGRSRGSY YGGRGYGNTG MGGYGNTGTG GYGNTGAGGP GNSYPHRGYG RD

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.