Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400010431 | Potato | nucleus | 90.65 | 91.3 |
| Zm00001d051566_P001 | Maize | nucleus | 5.18 | 40.0 |
| GSMUA_Achr1P20740_001 | Banana | nucleus | 29.5 | 34.8 |
| Solyc08g075300.2.1 | Tomato | nucleus, plastid | 15.83 | 34.7 |
| Solyc05g009980.2.1 | Tomato | nucleus | 29.78 | 34.56 |
| Solyc03g119850.1.1 | Tomato | mitochondrion | 21.15 | 33.87 |
| GSMUA_Achr2P07060_001 | Banana | nucleus | 27.91 | 32.72 |
| GSMUA_Achr9P00760_001 | Banana | nucleus | 27.34 | 31.61 |
| Os01t0111200-01 | Rice | nucleus | 26.76 | 30.0 |
| Zm00001d040142_P001 | Maize | nucleus, plastid | 26.19 | 28.13 |
| Zm00001d008439_P001 | Maize | plasma membrane | 25.9 | 27.73 |
| EES02617 | Sorghum | nucleus, plastid | 26.04 | 27.34 |
| HORVU3Hr1G000880.1 | Barley | nucleus | 25.9 | 27.27 |
| TraesCS3A01G006100.1 | Wheat | nucleus | 25.9 | 27.15 |
| TraesCS3D01G004500.1 | Wheat | plastid | 25.61 | 26.81 |
| Zm00001d027310_P001 | Maize | nucleus, plastid | 10.65 | 23.72 |
Protein Annotations
| Gene3D:2.30.30.100 | MapMan:35.1 | InterPro:DFDF | InterPro:FDF_dom | InterPro:IPR025762 | UniProt:K4C8A1 |
| InterPro:LSM_dom_sf | InterPro:Lsm14-like_N | PFAM:PF09532 | PFAM:PF12701 | PFscan:PS51512 | PANTHER:PTHR13586 |
| PANTHER:PTHR13586:SF0 | SMART:SM01199 | SMART:SM01271 | SUPFAM:SSF50182 | EnsemblPlantsGene:Solyc06g069280.2 | EnsemblPlants:Solyc06g069280.2.1 |
| UniParc:UPI0002766967 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:43038527..43047409
Molecular Weight (calculated)
75167.5 Da
IEP (calculated)
9.592
GRAVY (calculated)
-0.711
Length
695 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAASKAAD SYIGSLICLI TKSDIRYEGF LFHLDAAEST IGLRNVKSYG SEGRKKDGPQ ISPSDKIYEY IFFRGSDIKD LQVISSATPQ STAVVPDDPA
101: IIQTHFPNPT PPTIGMTSPG AVQVADVSTS APSMLPVAPF LLNLPPNPLL PSSNLWGSSL PPPPVNISGP AVPNYWPGLV GSSGGVSHYQ QQQQQQRFPP
201: PPQSLVASLP IQQQAQHQNV NALAGGSSLA AQHHPLLLPI STTSPNLLPA MPSPSGQSNP RQPAKPAFNL LSIPMPNDAF RTLSTVAVDS CPRTVSSLEA
301: ELNANANLTP VRKEPSSVIS PSGSFPTFSQ TVSSIVDTKG ASLSNLSRQS LLTPEVQSGE KDSSSSQSMK NPNFDVYTGQ ASVSEPLPSG STEETLESLP
401: KSPTKILRGS TSSHHNRSYF AQRRDGAHQD TSSTHHNSRG PPAHRGNVPN GGPIYAQQSY RKYASGRGNG LIGAALHSRQ SNMGMGRGKV PNGVPQHNHR
501: STGIQFRDGV TQHNHRNTGI QFRDGVPQHN HRNTGSHFRG RGAKNPLVTK RFSEDFDFEA MNEKFNKKEV WDFLGRSNKD EPDEGIGDEK EMGESDAEDT
601: TGDRSAKHDN KPVYCKEDFF DSLSCHALDR ESGKVKFSDQ RKKDVETFGE IQKNPWGRSQ RARMSGGVQQ SYRGRGYDNA RGGRGQGRTV WGRVT
101: IIQTHFPNPT PPTIGMTSPG AVQVADVSTS APSMLPVAPF LLNLPPNPLL PSSNLWGSSL PPPPVNISGP AVPNYWPGLV GSSGGVSHYQ QQQQQQRFPP
201: PPQSLVASLP IQQQAQHQNV NALAGGSSLA AQHHPLLLPI STTSPNLLPA MPSPSGQSNP RQPAKPAFNL LSIPMPNDAF RTLSTVAVDS CPRTVSSLEA
301: ELNANANLTP VRKEPSSVIS PSGSFPTFSQ TVSSIVDTKG ASLSNLSRQS LLTPEVQSGE KDSSSSQSMK NPNFDVYTGQ ASVSEPLPSG STEETLESLP
401: KSPTKILRGS TSSHHNRSYF AQRRDGAHQD TSSTHHNSRG PPAHRGNVPN GGPIYAQQSY RKYASGRGNG LIGAALHSRQ SNMGMGRGKV PNGVPQHNHR
501: STGIQFRDGV TQHNHRNTGI QFRDGVPQHN HRNTGSHFRG RGAKNPLVTK RFSEDFDFEA MNEKFNKKEV WDFLGRSNKD EPDEGIGDEK EMGESDAEDT
601: TGDRSAKHDN KPVYCKEDFF DSLSCHALDR ESGKVKFSDQ RKKDVETFGE IQKNPWGRSQ RARMSGGVQQ SYRGRGYDNA RGGRGQGRTV WGRVT
001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKM HENLSGGRGR GRGRGAGRSH QVMKFTEDFD FTAMNEKFNK DEVWGHLGKS TTLDGDEDDD SPTVDEAELP
501: KIEAKPVYNK DDFFDSLSSN TIDRESQNSR PRFSEQRKLD TETFGEFSRF RGGRGGRGGY GRNNGYSRGG YGGRGYGGYG GRGGGGGGYG YGGRGQGRGV
601: SNRTT
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKM HENLSGGRGR GRGRGAGRSH QVMKFTEDFD FTAMNEKFNK DEVWGHLGKS TTLDGDEDDD SPTVDEAELP
501: KIEAKPVYNK DDFFDSLSSN TIDRESQNSR PRFSEQRKLD TETFGEFSRF RGGRGGRGGY GRNNGYSRGG YGGRGYGGYG GRGGGGGGYG YGGRGQGRGV
601: SNRTT
Arabidopsis Description
DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.