Factsheet for HORVU3Hr1G000880.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G056790.7
HORVU6Hr1G025870.1
HORVU6Hr1G033840.5
HORVU6Hr1G035420.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	HORVU5Hr1G056790.7	AT4G29510.1	21798944
AT1G26110.1	HORVU6Hr1G035420.6	AT4G34230.1	21798944
AT1G26110.1	HORVU6Hr1G025870.1	AT5G06770.1	21798944
AT1G26110.1	HORVU6Hr1G033840.5	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G004500.1	Wheat	plastid	83.33	82.83
TraesCS3A01G006100.1	Wheat	nucleus	80.76	80.39
Os01t0111200-01	Rice	nucleus	68.64	73.06
Zm00001d051566_P001	Maize	nucleus	9.7	71.11
VIT_02s0087g00680.t01	Wine grape	cytosol	8.64	67.86
EES02617	Sorghum	nucleus, plastid	66.52	66.31
Zm00001d008439_P001	Maize	plasma membrane	64.85	65.95
Zm00001d040142_P001	Maize	nucleus, plastid	62.12	63.37
KRG93865	Soybean	cytosol	4.85	61.54
GSMUA_Achr1P20740_001	Banana	nucleus	46.06	51.61
Solyc08g075300.2.1	Tomato	nucleus, plastid	23.64	49.21
GSMUA_Achr2P07060_001	Banana	nucleus	43.79	48.74
VIT_01s0011g02820.t01	Wine grape	nucleus	45.3	48.54
GSMUA_Achr9P00760_001	Banana	nucleus	42.12	46.26
KRH75529	Soybean	nucleus	42.73	46.15
PGSC0003DMT400002103	Potato	nucleus	41.52	45.82
KRH70630	Soybean	nucleus	42.88	45.65
CDY20530	Canola	nucleus	41.36	45.35
Zm00001d027310_P001	Maize	nucleus, plastid	21.36	45.19
KRH62823	Soybean	nucleus	42.12	44.84
KRH70633	Soybean	nucleus	41.67	44.64
Bra011009.1-P	Field mustard	nucleus	40.3	44.56
AT1G26110.1	Thale cress	nucleus	41.06	44.35
Solyc05g009980.2.1	Tomato	nucleus	40.15	44.24
CDY55955	Canola	nucleus	39.85	44.13
CDY36091	Canola	nucleus	39.85	44.05
CDY51127	Canola	nucleus	38.48	43.42
KRH76455	Soybean	nucleus	28.03	32.8
CDY70855	Canola	plastid	11.97	31.73
CDX87795	Canola	nucleus	23.79	30.54
VIT_02s0087g00650.t01	Wine grape	cytosol	23.64	30.47
Solyc03g119850.1.1	Tomato	mitochondrion	20.0	30.41
Bra027601.1-P	Field mustard	nucleus, plastid	25.45	30.32
CDY68331	Canola	nucleus, plastid	23.48	29.64
Bra021964.1-P	Field mustard	nucleus, plastid	23.64	29.21
KRH39773	Soybean	endoplasmic reticulum	25.15	28.18
AT5G45330.1	Thale cress	nucleus, plastid	24.24	28.02
PGSC0003DMT400010431	Potato	nucleus	28.18	26.96
Solyc06g069280.2.1	Tomato	nucleus	27.27	25.9
CDY13062	Canola	nucleus, plastid	15.76	24.88

Protein Annotations

MapMan:16.8.2.2.3	Gene3D:2.30.30.100	InterPro:DFDF	InterPro:FDF_dom	GO:GO:0000932	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0010606
GO:GO:0016043	GO:GO:0017148	GO:GO:0019538	GO:GO:0031087	GO:GO:0033962	GO:GO:0042803
EnsemblPlantsGene:HORVU3Hr1G000880	EnsemblPlants:HORVU3Hr1G000880.1	InterPro:IPR025762	InterPro:IPR025768	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N
UniProt:M0XB03	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51536	PANTHER:PTHR13586
PANTHER:PTHR13586:SF10	SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182	InterPro:TFG_box	UniParc:UPI000296E811
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:1945843..1951867

Molecular Weight (calculated)

69287.1 Da

IEP (calculated)

7.855

GRAVY (calculated)

-0.752

Length

660 amino acids

Sequence
(BLAST)

001: MAAEAPPPPP SSSSSAPARQ APAGAASPET YLGSLISLTS KSEIRYEGVL YNINTEESSI GLRNVRSFGT EGRKKDGIQI PASDKVYEYI LFRGSDIKDL
101: QVKSSPPPPQ PQPAPLHNDP AIIQSHYPPS STTSSLQSAG GAALPDLSSQ PAQYGFQRPN FPSNIPLYQP GNNPWGSSGQ PPAGNASALS VPPMYWQGYY
201: TPPGGLPSHL QQPTMLQPTP GLSAPQTFQY PGLNPSLPSG PPLLQPSVTG QGPSSSATPA TTAPSASLLG PETSKPLLPN MVPLFTPPVP SHGASLPVAS
301: QPISMTETSA TASQNLNSLV SSKTPAVNSG STLLYQTAPQ AISSTSASSS LAGLEIPAPL LASSGQLLQN APSMLSSSQS MQTPLQMSNN ITKPADPKTR
401: VAEPLLPDPP TRALPENNEP ILPLPKQTPQ RYNGAGSQGH HNYRGRGRGR GSALSQASTK FTEEFDFMAM NEKFNKDEVW GHLGKKSQSR DKDGDQGDDV
501: FDEDLEYEET DNPELDVKPV YVKDDFFDSL SGGTFGRGGQ NGRPRFSELR KMDTETFGDF PRHRQPYRGG GRGYRGGGGR SRGSYYGGRG DYGNIGRGGG
601: QENYYGGGRG GYGNMGRGGG GGGGQDNYYG GGGGRGGYGR GGGQEDSYPQ RGGSGSYGRG

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.