Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G194300.1 | Wheat | cytosol | 73.31 | 84.18 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 72.73 | 81.58 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 72.43 | 81.25 |
| Os02t0194200-01 | Rice | nucleus | 67.45 | 76.67 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 65.4 | 72.88 |
| EES04688 | Sorghum | nucleus | 61.29 | 70.85 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 37.83 | 66.15 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 52.2 | 58.55 |
| CDY47892 | Canola | cytosol | 39.0 | 57.83 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 50.15 | 57.19 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 49.56 | 56.9 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 50.15 | 56.81 |
| KRG95373 | Soybean | cytosol | 48.97 | 56.61 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 48.97 | 56.42 |
| KRH67057 | Soybean | nucleus | 48.68 | 56.27 |
| KRH67059 | Soybean | cytosol, nucleus | 48.68 | 56.27 |
| Bra001436.1-P | Field mustard | cytosol | 38.71 | 56.17 |
| KRH71867 | Soybean | nucleus | 48.39 | 55.93 |
| CDY01104 | Canola | cytosol | 39.3 | 55.83 |
| CDX73836 | Canola | cytosol | 38.42 | 55.74 |
| PGSC0003DMT400060957 | Potato | cytosol | 47.8 | 55.44 |
| CDY08453 | Canola | cytosol | 39.3 | 54.92 |
| Bra034776.1-P | Field mustard | cytosol | 39.3 | 54.92 |
| Solyc10g080480.1.1 | Tomato | nucleus | 46.33 | 54.67 |
| CDY00756 | Canola | cytosol | 37.83 | 54.66 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 49.56 | 54.52 |
| KRG93085 | Soybean | cytosol | 47.21 | 54.21 |
| KRH36330 | Soybean | nucleus | 47.21 | 54.21 |
| AT5G06770.1 | Thale cress | cytosol | 38.12 | 54.17 |
| Solyc10g078750.1.1 | Tomato | nucleus | 45.75 | 53.24 |
| PGSC0003DMT400025445 | Potato | cytosol | 44.28 | 53.17 |
| PGSC0003DMT400029683 | Potato | cytosol | 46.63 | 52.82 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 21.11 | 52.55 |
| AT3G12130.1 | Thale cress | cytosol | 37.83 | 52.02 |
| Solyc01g014850.2.1 | Tomato | nucleus | 38.12 | 52.0 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 36.66 | 51.02 |
| PGSC0003DMT400061829 | Potato | plastid | 33.14 | 50.67 |
| PGSC0003DMT400016195 | Potato | cytosol | 42.82 | 50.52 |
| Solyc01g073940.2.1 | Tomato | nucleus | 42.52 | 50.17 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 27.86 | 50.0 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 51.03 | 48.6 |
| Solyc03g063200.2.1 | Tomato | nucleus | 21.41 | 44.79 |
| CDY72512 | Canola | nucleus | 26.98 | 44.44 |
| CDY05002 | Canola | cytosol | 18.77 | 41.03 |
| Bra028719.1-P | Field mustard | cytosol | 18.77 | 41.03 |
| Solyc01g014860.2.1 | Tomato | nucleus | 5.87 | 40.82 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | UniProt:A0A287TVT4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:HORVU6Hr1G033840 | EnsemblPlants:HORVU6Hr1G033840.5 | InterPro:IPR000571 |
| InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFAM:PF00642 |
| PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF147 | SMART:SM00322 | SMART:SM00356 |
| SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI000B475ABF | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:156186834..156189910
Molecular Weight (calculated)
35775.3 Da
IEP (calculated)
10.564
GRAVY (calculated)
-0.626
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: PSLPPPLLAA ATRRPKTLAK LAGATARTHA RSDGRCRPQE GHGGRRQRRH PGREAHARES ESFQTGVGSK SKPCTKFFST AGCPFGEGCH FLHYFPGGHQ
101: AVAKMSNLGG QSFAHPQGRM PAGSAVPNGP PTPTVKTKLC NKYNTAEGCK WGDKCHFAHG ERELGKHTFI NNSMPPHMGP RPTTHFGPPA MPNPGMSTPA
201: GFGASSTAKV SVDASLAGAI IGRGGVNTKQ ISRVTGAKLA IRDHESNEAL KNIELEGTFD QINNASAMLR ELIFRISGGT NPNAPPSGES LAGGSHRGGG
301: GGPGSNFKTK LCDNFTKGSC TFGDRCHFAH GESELRKSAA A
101: AVAKMSNLGG QSFAHPQGRM PAGSAVPNGP PTPTVKTKLC NKYNTAEGCK WGDKCHFAHG ERELGKHTFI NNSMPPHMGP RPTTHFGPPA MPNPGMSTPA
201: GFGASSTAKV SVDASLAGAI IGRGGVNTKQ ISRVTGAKLA IRDHESNEAL KNIELEGTFD QINNASAMLR ELIFRISGGT NPNAPPSGES LAGGSHRGGG
301: GGPGSNFKTK LCDNFTKGSC TFGDRCHFAH GESELRKSAA A
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.