Factsheet for TraesCS6D01G155300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G237400.1
TraesCS2B01G259400.1
TraesCS2D01G238900.1
TraesCS4A01G288500.1
TraesCS4B01G026400.1
TraesCS4D01G023800.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	TraesCS2A01G237400.1	AT5G04280.1	21798944
AT5G06770.1	TraesCS2B01G259400.1	AT5G04280.1	21798944
AT5G06770.1	TraesCS2D01G238900.1	AT5G04280.1	21798944
AT5G06770.1	TraesCS4A01G288500.1	AT5G04280.1	21798944
AT5G06770.1	TraesCS4B01G026400.1	AT5G04280.1	21798944
AT5G06770.1	TraesCS4D01G023800.2	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G155400.1	Wheat	cytosol	78.76	79.28
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	47.06	73.85
Os02t0194200-01	Rice	nucleus	68.3	69.67
HORVU6Hr1G033840.5	Barley	mitochondrion	72.88	65.4
EES04688	Sorghum	nucleus	62.75	65.08
TraesCS7D01G396100.2	Wheat	cytosol	59.8	61.0
TraesCS6A01G166800.1	Wheat	cytosol	54.25	53.55
GSMUA_Achr1P19650_001	Banana	nucleus	52.61	52.96
VIT_13s0156g00320.t01	Wine grape	cytosol	50.33	52.03
VIT_08s0007g06400.t01	Wine grape	cytosol	50.33	51.85
VIT_06s0004g01290.t01	Wine grape	cytosol	50.98	51.83
VIT_11s0016g04280.t01	Wine grape	cytosol	23.2	51.82
Solyc01g014850.2.1	Tomato	nucleus	41.83	51.2
KRG95373	Soybean	cytosol	49.02	50.85
TraesCS2D01G488300.1	Wheat	nucleus, plastid	50.33	50.66
PGSC0003DMT400061829	Potato	plastid	36.6	50.22
KRH67057	Soybean	nucleus	48.37	50.17
KRH67059	Soybean	cytosol, nucleus	48.37	50.17
CDY47892	Canola	cytosol	37.25	49.57
PGSC0003DMT400060957	Potato	cytosol	47.39	49.32
CDY01104	Canola	cytosol	38.56	49.17
GSMUA_Achr7P20530_001	Banana	nucleus	48.04	49.16
KRH36330	Soybean	nucleus	47.71	49.16
KRH71867	Soybean	nucleus	47.39	49.15
Bra001436.1-P	Field mustard	cytosol	37.58	48.94
KRG93085	Soybean	cytosol	47.39	48.82
Solyc10g078750.1.1	Tomato	nucleus	46.73	48.81
Bra034776.1-P	Field mustard	cytosol	38.89	48.77
CDY08453	Canola	cytosol	38.89	48.77
PGSC0003DMT400025445	Potato	cytosol	45.1	48.59
CDX73836	Canola	cytosol	37.25	48.51
PGSC0003DMT400029683	Potato	cytosol	47.71	48.51
Solyc10g080480.1.1	Tomato	nucleus	45.42	48.1
CDY00756	Canola	cytosol	36.93	47.88
TraesCS6D01G155200.1	Wheat	cytosol	32.68	47.85
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	37.58	46.94
AT5G06770.1	Thale cress	cytosol	36.27	46.25
AT3G12130.1	Thale cress	cytosol	36.93	45.56
PGSC0003DMT400016195	Potato	cytosol	41.18	43.6
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	50.98	43.58
Solyc01g073940.2.1	Tomato	nucleus	40.85	43.25
CDY72512	Canola	nucleus	25.16	37.2
CDY05002	Canola	cytosol	18.95	37.18
Bra028719.1-P	Field mustard	cytosol	18.95	37.18
Solyc03g063200.2.1	Tomato	nucleus	19.61	36.81
Solyc01g014860.2.1	Tomato	nucleus	1.31	8.16

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFAM:PF00642	PFscan:PS50084	PFscan:PS50103	PANTHER:PTHR10288
PANTHER:PTHR10288:SF147	SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229	EnsemblPlantsGene:TraesCS6D01G155300
EnsemblPlants:TraesCS6D01G155300.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	TIGR:cd00105	SEG:seg	:

Description

No Description!

Coordinates

chr6D:-:131678240..131682238

Molecular Weight (calculated)

32686.0 Da

IEP (calculated)

10.312

GRAVY (calculated)

-0.499

Length

306 amino acids

Sequence
(BLAST)

001: MRQVLQYRRL PLWFQLPLHP RHPGRLSGRR RNEHPEWPSS SSKNSSTSGC PFGEGCHFLH YFPGGHQAVA KMSNLGGQAF AHPQGRMPAG SAVPDGPLTP
101: TVKTKLCNKY NTAEGCKWGD KCHFAHGERE LGKHMFINKS MPPHMGPRPT GHFGPPAMPS PAMTIPAGFG ASSTAKVSVD ASLAGGIIGR GGVNTKQISR
201: VTGAKLAIRD HESNEALKNI ELEGTFDQIN NASAMLRELF FRISGGANAP LPSENLAGGS HRAGGGGQGS NFKTKLCDNF TKGSCTFGVR CHFAHGENEL
301: LKSAAA

Best Arabidopsis Sequence Match ( AT5G06770.1 )
(BLAST)

001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA

Arabidopsis Description

Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.