Factsheet for Solyc01g073940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 2
extracellular 1
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016195	Potato	cytosol	93.77	93.77
VIT_13s0156g00320.t01	Wine grape	cytosol	55.71	54.39
Solyc10g078750.1.1	Tomato	nucleus	51.21	50.51
Solyc01g014850.2.1	Tomato	nucleus	42.91	49.6
Os02t0194200-01	Rice	nucleus	51.21	49.33
Zm00001d036796_P004	Maize	extracellular	50.17	48.17
GSMUA_Achr7P20530_001	Banana	nucleus	49.83	48.16
Solyc10g080480.1.1	Tomato	nucleus	48.1	48.1
TraesCS6B01G194300.1	Wheat	cytosol	49.13	47.81
EES04688	Sorghum	nucleus	48.79	47.8
Os04t0665700-01	Rice	nucleus	50.52	47.25
TraesCS6A01G166900.1	Wheat	cytosol	49.48	47.04
TraesCS6D01G155400.1	Wheat	cytosol	49.48	47.04
Os06t0618100-01	Rice	nucleus	41.87	46.72
GSMUA_Achr1P19650_001	Banana	nucleus	48.79	46.38
KXG20371	Sorghum	cytosol	49.13	46.25
TraesCS7D01G396100.2	Wheat	cytosol	47.75	46.0
TraesCS7B01G302400.1	Wheat	cytosol	47.4	45.67
TraesCS7A01G402300.1	Wheat	cytosol	47.06	45.33
EES11610	Sorghum	cytosol	46.37	43.79
TraesCS2D01G488300.1	Wheat	nucleus, plastid	46.02	43.75
TraesCS2A01G488000.1	Wheat	nucleus, plastid	46.02	43.46
TraesCS2B01G515600.1	Wheat	nucleus, plastid	46.02	43.32
Zm00001d001933_P001	Maize	nucleus	45.67	43.0
HORVU6Hr1G033840.5	Barley	mitochondrion	50.17	42.52
Solyc03g063200.2.1	Tomato	nucleus	23.18	41.1
TraesCS6D01G155300.1	Wheat	mitochondrion	43.25	40.85
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	25.95	38.46
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	47.4	38.27
Zm00001d046740_P001	Maize	plastid	44.64	37.94
TraesCS6D01G155200.1	Wheat	cytosol	26.99	37.32
Solyc01g014860.2.1	Tomato	nucleus	6.23	36.73
HORVU6Hr1G025870.1	Barley	cytosol	23.88	36.32
TraesCS6A01G166800.1	Wheat	cytosol	37.72	35.16
TraesCS6A01G166700.1	Wheat	cytosol	32.18	29.52
Zm00001d032312_P001	Maize	cytosol	14.53	28.38

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612	UniProt:K4AXD9	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFAM:PF00642	PFAM:PF14608	PFscan:PS50084
PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF154	SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791
SUPFAM:SSF90229	EnsemblPlantsGene:Solyc01g073940.2	EnsemblPlants:Solyc01g073940.2.1	UniParc:UPI0002761944	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:81273913..81277713

Molecular Weight (calculated)

30626.4 Da

IEP (calculated)

9.792

GRAVY (calculated)

-0.425

Length

289 amino acids

Sequence
(BLAST)

001: MEFGRKRRGG GAFGSSGGMK KSRDVSESFT TGVGSKSKPC MKFYSTSGCS FGAGCHFLHY VPGYTAMSQL SNMGSNPAPP FGRNSASFSD GPGPAMKSKF
101: CSKFNTAEGC RFGDRCHFAH GEMEIGKQVR PAYDDFQAKG PPSGFSGYLE PSQPGLAATN FGASATTTIS VDASLAGNII GKSGVNSKHI CLVTGVKLFI
201: REHETDTNKR NVELQGTFDQ INQARAMVRE LISNISTPTG GLKNAAPFSR GPPGPLKTKM CANFSKGLCT FGEKCHFAHG PSELQKPLT

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.