Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 56.13 | 89.23 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 59.35 | 60.53 |
| Os02t0194200-01 | Rice | nucleus | 52.58 | 54.33 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 53.55 | 54.25 |
| EES04688 | Sorghum | nucleus | 47.74 | 50.17 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 48.06 | 49.67 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 54.52 | 49.56 |
| Solyc03g063200.2.1 | Tomato | nucleus | 22.9 | 43.56 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 42.58 | 43.42 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 18.71 | 42.34 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 40.0 | 41.89 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 40.32 | 41.53 |
| KRG95373 | Soybean | cytosol | 38.71 | 40.68 |
| KRH67057 | Soybean | nucleus | 38.71 | 40.68 |
| KRH67059 | Soybean | cytosol, nucleus | 38.71 | 40.68 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 38.71 | 40.4 |
| KRH36330 | Soybean | nucleus | 37.74 | 39.39 |
| PGSC0003DMT400060957 | Potato | cytosol | 37.1 | 39.12 |
| KRG93085 | Soybean | cytosol | 37.42 | 39.06 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 37.42 | 38.8 |
| Solyc01g014860.2.1 | Tomato | nucleus | 6.13 | 38.78 |
| PGSC0003DMT400025445 | Potato | cytosol | 35.48 | 38.73 |
| Solyc10g078750.1.1 | Tomato | nucleus | 36.45 | 38.57 |
| KRH71867 | Soybean | nucleus | 36.45 | 38.31 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 37.42 | 37.91 |
| PGSC0003DMT400016195 | Potato | cytosol | 35.16 | 37.72 |
| Solyc10g080480.1.1 | Tomato | nucleus | 35.16 | 37.72 |
| Solyc01g073940.2.1 | Tomato | nucleus | 35.16 | 37.72 |
| PGSC0003DMT400029683 | Potato | cytosol | 35.81 | 36.88 |
| CDY47892 | Canola | cytosol | 26.45 | 35.65 |
| Solyc01g014850.2.1 | Tomato | nucleus | 28.39 | 35.2 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 40.65 | 35.2 |
| Bra001436.1-P | Field mustard | cytosol | 26.45 | 34.89 |
| CDY01104 | Canola | cytosol | 26.77 | 34.58 |
| CDX73836 | Canola | cytosol | 26.13 | 34.47 |
| CDY00756 | Canola | cytosol | 26.13 | 34.32 |
| CDY08453 | Canola | cytosol | 26.77 | 34.02 |
| Bra034776.1-P | Field mustard | cytosol | 26.77 | 34.02 |
| AT5G06770.1 | Thale cress | cytosol | 26.13 | 33.75 |
| AT3G12130.1 | Thale cress | cytosol | 25.81 | 32.26 |
| PGSC0003DMT400061829 | Potato | plastid | 22.58 | 31.39 |
| CDY72512 | Canola | nucleus | 19.68 | 29.47 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 23.23 | 29.39 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 29.68 | 29.21 |
| CDY05002 | Canola | cytosol | 10.32 | 20.51 |
| Bra028719.1-P | Field mustard | cytosol | 10.32 | 20.51 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| InterPro:KH_sf_prok-type | PFAM:PF00013 | PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF147 | SMART:SM00356 | SUPFAM:SSF54814 | SUPFAM:SSF90229 | EnsemblPlantsGene:TraesCS6A01G166800 | EnsemblPlants:TraesCS6A01G166800.1 |
| InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6A:-:169973235..170010162
Molecular Weight (calculated)
32198.3 Da
IEP (calculated)
9.304
GRAVY (calculated)
-0.281
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDCFGVTVP EAFEAGAGSK SKPCVRFFST AGCRFGSNCH FIHDIPGGSQ AVAETSIPSG PAPAPKITES ESFQTGVGSK SKPCTKFFSS TGCPFGEGCH
101: FLHYFPGGHQ AVAKMSNLGG QAFAQPQGRM PAGSAVPDGQ PTPTVKTKLC NKYNTAEGCK WGDKCHFAHG ERELGKHTFI NNSMPPRMGT RPIGHFGPPA
201: MPGPAMTTPT GFGASSTAKV SVDASLVGGI IGRGGVNTKQ ISGVTGAKLA IRLEDLTAAA AAVSREATSR PSCATTSRKD RARLATDATL PMARTSCANR
301: LPREVDLPTH
101: FLHYFPGGHQ AVAKMSNLGG QAFAQPQGRM PAGSAVPDGQ PTPTVKTKLC NKYNTAEGCK WGDKCHFAHG ERELGKHTFI NNSMPPRMGT RPIGHFGPPA
201: MPGPAMTTPT GFGASSTAKV SVDASLVGGI IGRGGVNTKQ ISGVTGAKLA IRLEDLTAAA AAVSREATSR PSCATTSRKD RARLATDATL PMARTSCANR
301: LPREVDLPTH
001: MDSSYSDSRP MFVQSPYGGW NQTQMIDSMA NPMNNEQGDL HSLSESQSQS QPSQQLQPAL KRPRLVDDNL FNPASSFPQP SSSNPWMVPS LNPPPVNKGT
101: ANIFYKTRMC AKFRAGTCRN GELCNFAHGI EDLRQPPSNW QEIVGPPPAG QDRERERERE RERERPSLAP VVNNNWEDDQ KIILRMKLCR KFCFGEECPY
201: GDRCNFIHED LSKFREDSGK LRESSVISVG ATAADQPSDT ASNLIEVNRQ GSIPVPAPMN NGGVVKTVYW KTRLCMKFDI TGQCPFGDKC HFAHGQAELH
301: NSVGRVEGEA MNAVASVNKQ AVVPANEAFA MKPITQVTAD SSGLNEEGRR KKCLLKWSDS KKINRIYGDW IDDLPVGQKS TKPVES
101: ANIFYKTRMC AKFRAGTCRN GELCNFAHGI EDLRQPPSNW QEIVGPPPAG QDRERERERE RERERPSLAP VVNNNWEDDQ KIILRMKLCR KFCFGEECPY
201: GDRCNFIHED LSKFREDSGK LRESSVISVG ATAADQPSDT ASNLIEVNRQ GSIPVPAPMN NGGVVKTVYW KTRLCMKFDI TGQCPFGDKC HFAHGQAELH
301: NSVGRVEGEA MNAVASVNKQ AVVPANEAFA MKPITQVTAD SSGLNEEGRR KKCLLKWSDS KKINRIYGDW IDDLPVGQKS TKPVES
Arabidopsis Description
Zinc finger CCCH domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.