Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400043581 | |
| PGSC0003DMT400079815 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06770.1 | PGSC0003DMT400043581 | AT5G04280.1 | 21798944 |
| AT5G06770.1 | PGSC0003DMT400079815 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g063200.2.1 | Tomato | nucleus | 45.42 | 79.14 |
| PGSC0003DMT400060957 | Potato | cytosol | 76.06 | 73.47 |
| PGSC0003DMT400029683 | Potato | cytosol | 74.3 | 70.1 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 67.96 | 64.98 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 30.99 | 64.23 |
| KRH67059 | Soybean | cytosol, nucleus | 65.49 | 63.05 |
| KRG95373 | Soybean | cytosol | 65.49 | 63.05 |
| KRH67057 | Soybean | nucleus | 65.14 | 62.71 |
| KRH71867 | Soybean | nucleus | 64.44 | 62.03 |
| CDY47892 | Canola | cytosol | 50.0 | 61.74 |
| Bra001436.1-P | Field mustard | cytosol | 51.06 | 61.7 |
| CDX73836 | Canola | cytosol | 50.35 | 60.85 |
| CDY01104 | Canola | cytosol | 51.06 | 60.42 |
| CDY00756 | Canola | cytosol | 49.65 | 59.75 |
| Bra034776.1-P | Field mustard | cytosol | 50.7 | 59.02 |
| CDY08453 | Canola | cytosol | 50.7 | 59.02 |
| AT5G06770.1 | Thale cress | cytosol | 48.59 | 57.5 |
| AT3G12130.1 | Thale cress | cytosol | 49.65 | 56.85 |
| PGSC0003DMT400061829 | Potato | plastid | 44.01 | 56.05 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 59.15 | 55.26 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 58.1 | 55.18 |
| Os02t0194200-01 | Rice | nucleus | 56.69 | 53.67 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 46.13 | 53.47 |
| EES04688 | Sorghum | nucleus | 54.23 | 52.2 |
| KXG20371 | Sorghum | cytosol | 55.99 | 51.79 |
| Os04t0665700-01 | Rice | nucleus | 55.99 | 51.46 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 53.52 | 51.18 |
| Zm00001d036796_P004 | Maize | extracellular | 54.23 | 51.16 |
| CDY72512 | Canola | nucleus | 36.97 | 50.72 |
| Os06t0618100-01 | Rice | nucleus | 46.13 | 50.58 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 53.52 | 49.67 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 53.17 | 49.67 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 53.17 | 49.67 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 53.17 | 49.67 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 53.52 | 49.51 |
| Zm00001d001933_P001 | Maize | nucleus | 53.52 | 49.51 |
| PGSC0003DMT400016195 | Potato | cytosol | 50.35 | 49.48 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 52.11 | 49.33 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 52.11 | 49.33 |
| EES11610 | Sorghum | cytosol | 52.82 | 49.02 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 51.76 | 49.0 |
| Bra028719.1-P | Field mustard | cytosol | 25.7 | 46.79 |
| CDY05002 | Canola | cytosol | 25.7 | 46.79 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 48.59 | 45.1 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 53.17 | 44.28 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 29.93 | 40.67 |
| Zm00001d046740_P001 | Maize | plastid | 48.59 | 40.59 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 48.94 | 38.83 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 26.06 | 37.95 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 25.35 | 37.89 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 38.73 | 35.48 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 34.15 | 30.79 |
| Zm00001d032312_P001 | Maize | cytosol | 14.44 | 27.7 |
Protein Annotations
| EntrezGene:102590737 | MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom |
| InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | UniProt:M1ALF9 | PFAM:PF00013 | PFAM:PF00642 | PFAM:PF14608 |
| EnsemblPlantsGene:PGSC0003DMG400009821 | PGSC:PGSC0003DMG400009821 | EnsemblPlants:PGSC0003DMT400025445 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF5 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI000295F791 |
| RefSeq:XP_006344031.1 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400009821]
Coordinates
chr3:+:24256772..24261636
Molecular Weight (calculated)
30016.0 Da
IEP (calculated)
10.089
GRAVY (calculated)
-0.381
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIRKRNRNE TGFNGNGGFK KAKPEMDSLS SGIGSKSKPC TKFFSTVGCP FGENCHFLHY VPGGYNAVAK IMNIAPSPAS PIASGNTPAV KTKICSKFNT
101: AEGCKFGDKC RFAHGEWEIG KPIVPSPRAM GVGPIPDRFG GRREPPVSGA AASFGTSAIA KISVDAFHVG PIIGKGGVNS KQICRQTGAK LAIREHEIDK
201: NLRNIELEGT FEQISRASAM VRELISSLGS VGGPGRTPAV QGGPAPPMSN YKTKLCENFA KGSCTFGERC HFAHGDAELR KTGG
101: AEGCKFGDKC RFAHGEWEIG KPIVPSPRAM GVGPIPDRFG GRREPPVSGA AASFGTSAIA KISVDAFHVG PIIGKGGVNS KQICRQTGAK LAIREHEIDK
201: NLRNIELEGT FEQISRASAM VRELISSLGS VGGPGRTPAV QGGPAPPMSN YKTKLCENFA KGSCTFGERC HFAHGDAELR KTGG
001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.